miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30431 3' -63.7 NC_006548.1 + 33571 0.67 0.201771
Target:  5'- cGCUUGgCGaUCGaCagCGCGCuGGGCACCg -3'
miRNA:   3'- uCGAACgGC-GGC-Gg-GCGCG-UCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 27931 0.67 0.201771
Target:  5'- cGGCgcguucucGCUGCCGCCaagGCccuGGGCACCa -3'
miRNA:   3'- -UCGaa------CGGCGGCGGg--CGcg-UCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 29728 0.67 0.196565
Target:  5'- cGGCa-GCCGCa-CCUGcCGCAccGGCACCg -3'
miRNA:   3'- -UCGaaCGGCGgcGGGC-GCGU--CCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 19184 0.67 0.196565
Target:  5'- cAGCgcUG-CGCUGCCCGCGUuGaGCACg -3'
miRNA:   3'- -UCGa-ACgGCGGCGGGCGCGuC-CGUGg -5'
30431 3' -63.7 NC_006548.1 + 33205 0.67 0.196565
Target:  5'- ----gGCCGCUGCCCGaGCAccGGCcaGCCc -3'
miRNA:   3'- ucgaaCGGCGGCGGGCgCGU--CCG--UGG- -5'
30431 3' -63.7 NC_006548.1 + 33401 0.67 0.196565
Target:  5'- cGCUUuCUGCCgGCCaCGCagggcguacaGCAGGCugCg -3'
miRNA:   3'- uCGAAcGGCGG-CGG-GCG----------CGUCCGugG- -5'
30431 3' -63.7 NC_006548.1 + 18966 0.67 0.196565
Target:  5'- ----cGCCaCCuccaCCGUGCAGGCGCCa -3'
miRNA:   3'- ucgaaCGGcGGcg--GGCGCGUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 18704 0.67 0.195538
Target:  5'- gAGCUagcgacccUGCCGCagauccuCGCCCaGcCGCAGGCcgugcugcucgacGCCa -3'
miRNA:   3'- -UCGA--------ACGGCG-------GCGGG-C-GCGUCCG-------------UGG- -5'
30431 3' -63.7 NC_006548.1 + 2785 0.67 0.18848
Target:  5'- uGCUUGCCcugcGCCGCCUGCagaucgaugacgaacGUuGGCAgCg -3'
miRNA:   3'- uCGAACGG----CGGCGGGCG---------------CGuCCGUgG- -5'
30431 3' -63.7 NC_006548.1 + 11689 0.67 0.181646
Target:  5'- cGGC--GCCGCCGCgcgCCGCGCAugaccagcuGGaCGCUg -3'
miRNA:   3'- -UCGaaCGGCGGCG---GGCGCGU---------CC-GUGG- -5'
30431 3' -63.7 NC_006548.1 + 4732 0.67 0.181646
Target:  5'- cAGCUUGgugaaGCCGUCCuccaacucaCGCAGGCGCUu -3'
miRNA:   3'- -UCGAACgg---CGGCGGGc--------GCGUCCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 13005 0.67 0.176901
Target:  5'- cGGCUgcGCCGCacaGCaCCGCGCucaGCGCg -3'
miRNA:   3'- -UCGAa-CGGCGg--CG-GGCGCGuc-CGUGg -5'
30431 3' -63.7 NC_006548.1 + 1315 0.67 0.176901
Target:  5'- aAGCcUGCCGCacCGCgCGCGCAaGCaaagACCg -3'
miRNA:   3'- -UCGaACGGCG--GCGgGCGCGUcCG----UGG- -5'
30431 3' -63.7 NC_006548.1 + 36340 0.67 0.176901
Target:  5'- cGCUcagUGCCGCCGCgagaucaCG-GUAcGGCGCCu -3'
miRNA:   3'- uCGA---ACGGCGGCGg------GCgCGU-CCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 4838 0.67 0.176901
Target:  5'- cAGCcUGCCGaUCGCCaCGCuCAaGCACCu -3'
miRNA:   3'- -UCGaACGGC-GGCGG-GCGcGUcCGUGG- -5'
30431 3' -63.7 NC_006548.1 + 29977 0.68 0.172266
Target:  5'- uGGCUaUGCCGcCCGUCgCGUGCcgcacaGCGCCg -3'
miRNA:   3'- -UCGA-ACGGC-GGCGG-GCGCGuc----CGUGG- -5'
30431 3' -63.7 NC_006548.1 + 27269 0.68 0.167739
Target:  5'- uGCUcgGUCGCCGCCUGCuggacGCGaGCACg -3'
miRNA:   3'- uCGAa-CGGCGGCGGGCG-----CGUcCGUGg -5'
30431 3' -63.7 NC_006548.1 + 1118 0.68 0.16332
Target:  5'- gAGCgaGCCugGCCGUCUGCGCGGccagcaaCGCCu -3'
miRNA:   3'- -UCGaaCGG--CGGCGGGCGCGUCc------GUGG- -5'
30431 3' -63.7 NC_006548.1 + 37070 0.68 0.154794
Target:  5'- uAGCgcauggGCUGCUGCCgGUGCuGcGCAUCg -3'
miRNA:   3'- -UCGaa----CGGCGGCGGgCGCGuC-CGUGG- -5'
30431 3' -63.7 NC_006548.1 + 3783 0.68 0.154794
Target:  5'- uGCUgaGCgCGCCGCUCcUGCAGGUagACCg -3'
miRNA:   3'- uCGAa-CG-GCGGCGGGcGCGUCCG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.