miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30445 3' -58.3 NC_006548.1 + 4351 0.66 0.469004
Target:  5'- -uGCAcCGUGCUGACGccGGAgCUGGCc -3'
miRNA:   3'- acUGUcGCACGGCUGUa-CCUgGGCCG- -5'
30445 3' -58.3 NC_006548.1 + 8272 0.66 0.458969
Target:  5'- aGAUcaUGgaGCCGGCAgcGACCCGGCg -3'
miRNA:   3'- aCUGucGCa-CGGCUGUacCUGGGCCG- -5'
30445 3' -58.3 NC_006548.1 + 18493 0.66 0.43925
Target:  5'- cGAUAGCGUcGCCa--AU-GACCCGGUc -3'
miRNA:   3'- aCUGUCGCA-CGGcugUAcCUGGGCCG- -5'
30445 3' -58.3 NC_006548.1 + 6011 0.66 0.429573
Target:  5'- gGGCAGaCGUucaGCCGuCAggcUGaGACuCCGGCg -3'
miRNA:   3'- aCUGUC-GCA---CGGCuGU---AC-CUG-GGCCG- -5'
30445 3' -58.3 NC_006548.1 + 8328 0.67 0.401314
Target:  5'- cGGCuGaCGUGauCCG-CAUGGGCCUGGg -3'
miRNA:   3'- aCUGuC-GCAC--GGCuGUACCUGGGCCg -5'
30445 3' -58.3 NC_006548.1 + 9274 0.67 0.392161
Target:  5'- gGACGGCcuaGCCGACGaucUGGAgaCgCUGGCg -3'
miRNA:   3'- aCUGUCGca-CGGCUGU---ACCU--G-GGCCG- -5'
30445 3' -58.3 NC_006548.1 + 2748 0.67 0.392161
Target:  5'- uUGGCAGCGUGCaauGCA-GG-CCauCGGCg -3'
miRNA:   3'- -ACUGUCGCACGgc-UGUaCCuGG--GCCG- -5'
30445 3' -58.3 NC_006548.1 + 33907 0.67 0.383145
Target:  5'- cGGCcaGGCcaGUGCCGACAucaugauguuacUGG-CCCGaGCg -3'
miRNA:   3'- aCUG--UCG--CACGGCUGU------------ACCuGGGC-CG- -5'
30445 3' -58.3 NC_006548.1 + 22730 0.67 0.38225
Target:  5'- cGcCAGCGUGgCGGCGuccUGGAUcuccagaUCGGCa -3'
miRNA:   3'- aCuGUCGCACgGCUGU---ACCUG-------GGCCG- -5'
30445 3' -58.3 NC_006548.1 + 14097 0.67 0.374267
Target:  5'- cGGCaAGUGguucGCCGAUuu-GACCCGGUa -3'
miRNA:   3'- aCUG-UCGCa---CGGCUGuacCUGGGCCG- -5'
30445 3' -58.3 NC_006548.1 + 7435 0.67 0.374267
Target:  5'- cGACugGGUGgggGCCGAUAUGGccGCCCuGGa -3'
miRNA:   3'- aCUG--UCGCa--CGGCUGUACC--UGGG-CCg -5'
30445 3' -58.3 NC_006548.1 + 8213 0.67 0.374267
Target:  5'- aUGACGGagcacaGUGCCGAgguCAUGGcGCaguuCGGCg -3'
miRNA:   3'- -ACUGUCg-----CACGGCU---GUACC-UGg---GCCG- -5'
30445 3' -58.3 NC_006548.1 + 24004 0.68 0.36553
Target:  5'- gGGCGGUGUccaGCCGAUcaGGGCCUuGCg -3'
miRNA:   3'- aCUGUCGCA---CGGCUGuaCCUGGGcCG- -5'
30445 3' -58.3 NC_006548.1 + 34447 0.68 0.356934
Target:  5'- -aACAGCGaggUGCCGcccACAaGGACCaGGCg -3'
miRNA:   3'- acUGUCGC---ACGGC---UGUaCCUGGgCCG- -5'
30445 3' -58.3 NC_006548.1 + 12956 0.68 0.348482
Target:  5'- -uGCGGCGcaGCCGugGU-GACCaCGGCu -3'
miRNA:   3'- acUGUCGCa-CGGCugUAcCUGG-GCCG- -5'
30445 3' -58.3 NC_006548.1 + 36705 0.69 0.316115
Target:  5'- aGAuCAGCGcGCCGGCcucAUGcGGCgCUGGCa -3'
miRNA:   3'- aCU-GUCGCaCGGCUG---UAC-CUG-GGCCG- -5'
30445 3' -58.3 NC_006548.1 + 27586 0.69 0.316115
Target:  5'- --cCGGCGaUGCCGGCGaacagcagccccUGGACCCGuCg -3'
miRNA:   3'- acuGUCGC-ACGGCUGU------------ACCUGGGCcG- -5'
30445 3' -58.3 NC_006548.1 + 32460 0.69 0.300803
Target:  5'- gGACuguGGcCGUGUCGACGgaUGGACCgcCGGUa -3'
miRNA:   3'- aCUG---UC-GCACGGCUGU--ACCUGG--GCCG- -5'
30445 3' -58.3 NC_006548.1 + 37393 0.69 0.278918
Target:  5'- cGGCAGCGUGgCGACGcgccccuuGACgaCCGGCu -3'
miRNA:   3'- aCUGUCGCACgGCUGUac------CUG--GGCCG- -5'
30445 3' -58.3 NC_006548.1 + 36546 0.7 0.27191
Target:  5'- gGACaAGCGUgacGCUGACGcUGGucaggcCCCGGCc -3'
miRNA:   3'- aCUG-UCGCA---CGGCUGU-ACCu-----GGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.