miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30480 5' -60.6 NC_006548.1 + 33814 1.1 0.000203
Target:  5'- uGGCCAUCGGCGACCGACCGCUCGCGAu -3'
miRNA:   3'- -CCGGUAGCCGCUGGCUGGCGAGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 12640 0.67 0.326469
Target:  5'- cGGaaGUUGGCGGCCGAgCGCcCgGCGu -3'
miRNA:   3'- -CCggUAGCCGCUGGCUgGCGaG-CGCu -5'
30480 5' -60.6 NC_006548.1 + 12588 0.66 0.353735
Target:  5'- aGGCCAgcuggUCGGCG-CCGgauGCCGaggccagcuuacggUCGCGAu -3'
miRNA:   3'- -CCGGU-----AGCCGCuGGC---UGGCg-------------AGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 25917 0.66 0.402045
Target:  5'- gGGCCAgcaggCGGUGACau-CCGCcacaUCGCa- -3'
miRNA:   3'- -CCGGUa----GCCGCUGgcuGGCG----AGCGcu -5'
30480 5' -60.6 NC_006548.1 + 29786 0.72 0.15155
Target:  5'- uGGCCAcccUCGGCGaaGCCGAacaUGCUgGUGAu -3'
miRNA:   3'- -CCGGU---AGCCGC--UGGCUg--GCGAgCGCU- -5'
30480 5' -60.6 NC_006548.1 + 22842 0.72 0.155261
Target:  5'- cGGCCucGUCGGCGAuCCGcaaaggcgacuccGCCGCuUCGgGAc -3'
miRNA:   3'- -CCGG--UAGCCGCU-GGC-------------UGGCG-AGCgCU- -5'
30480 5' -60.6 NC_006548.1 + 28982 0.71 0.175076
Target:  5'- cGCCGuacuucuucucgaucUCGGCG-CCGGCCGcCUCGaCGGu -3'
miRNA:   3'- cCGGU---------------AGCCGCuGGCUGGC-GAGC-GCU- -5'
30480 5' -60.6 NC_006548.1 + 33934 0.7 0.2082
Target:  5'- cGuCCAUCGuCGcucACCGGCCGCgCGCGAa -3'
miRNA:   3'- cC-GGUAGCcGC---UGGCUGGCGaGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 26397 0.69 0.249105
Target:  5'- uGGCCAUCGaccCGGCCG-CCGaaCGCGc -3'
miRNA:   3'- -CCGGUAGCc--GCUGGCuGGCgaGCGCu -5'
30480 5' -60.6 NC_006548.1 + 21207 0.67 0.318752
Target:  5'- cGGCgGgCGGCGAUgGcGCCGCUgGCa- -3'
miRNA:   3'- -CCGgUaGCCGCUGgC-UGGCGAgCGcu -5'
30480 5' -60.6 NC_006548.1 + 8188 0.68 0.268577
Target:  5'- uGGCgCAguUCGGCGACggccucccuuaCGACCGCaucCGCGu -3'
miRNA:   3'- -CCG-GU--AGCCGCUG-----------GCUGGCGa--GCGCu -5'
30480 5' -60.6 NC_006548.1 + 27073 0.69 0.249105
Target:  5'- gGGCCGUCuGCuGAUCGGCgGaCUCGCcGAc -3'
miRNA:   3'- -CCGGUAGcCG-CUGGCUGgC-GAGCG-CU- -5'
30480 5' -60.6 NC_006548.1 + 2731 0.75 0.095122
Target:  5'- aGGCCAUCGGCGagGCUGuCCaGgUCGUGAg -3'
miRNA:   3'- -CCGGUAGCCGC--UGGCuGG-CgAGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 32437 0.68 0.28223
Target:  5'- uGCCAUCGGCGuccuCgCGAUCGaUCuGCGAc -3'
miRNA:   3'- cCGGUAGCCGCu---G-GCUGGCgAG-CGCU- -5'
30480 5' -60.6 NC_006548.1 + 29411 0.74 0.106278
Target:  5'- uGCCAUCGGCGA--GACCGCgcagCGCa- -3'
miRNA:   3'- cCGGUAGCCGCUggCUGGCGa---GCGcu -5'
30480 5' -60.6 NC_006548.1 + 36636 0.69 0.249105
Target:  5'- cGGCCG-CGGCG-UUGAUCGCgucgaCGCGGa -3'
miRNA:   3'- -CCGGUaGCCGCuGGCUGGCGa----GCGCU- -5'
30480 5' -60.6 NC_006548.1 + 21452 0.67 0.300793
Target:  5'- aGCCGaugaugcaaguggUGGCGGCCGGCgGCagagUCGCGGc -3'
miRNA:   3'- cCGGUa------------GCCGCUGGCUGgCG----AGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 12892 0.67 0.342316
Target:  5'- aGCCAcacCGGacuuACCGcGCCGCUCGCGc -3'
miRNA:   3'- cCGGUa--GCCgc--UGGC-UGGCGAGCGCu -5'
30480 5' -60.6 NC_006548.1 + 16932 0.74 0.112308
Target:  5'- uGUCGUCauaGCGGCCGACCGC-CGUGGg -3'
miRNA:   3'- cCGGUAGc--CGCUGGCUGGCGaGCGCU- -5'
30480 5' -60.6 NC_006548.1 + 1182 0.71 0.168681
Target:  5'- uGGCCGcgCaGaCGGCCaGGCuCGCUCGCGAa -3'
miRNA:   3'- -CCGGUa-GcC-GCUGG-CUG-GCGAGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.