miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30489 5' -60.8 NC_006548.1 + 27861 0.66 0.316378
Target:  5'- gGUGCAGCGCa-GUGGUGGCCgAgGCg -3'
miRNA:   3'- aCGCGUCGUGgcCGUCGUCGGgUaCG- -5'
30489 5' -60.8 NC_006548.1 + 32461 0.66 0.316378
Target:  5'- gGCGaCGGCuGCCGGCca-GGCUgAUGCc -3'
miRNA:   3'- aCGC-GUCG-UGGCCGucgUCGGgUACG- -5'
30489 5' -60.8 NC_006548.1 + 12050 0.66 0.316378
Target:  5'- aGCGUgaacguccGGCGCCGaGCAuGCugGGUCgGUGCg -3'
miRNA:   3'- aCGCG--------UCGUGGC-CGU-CG--UCGGgUACG- -5'
30489 5' -60.8 NC_006548.1 + 17053 0.66 0.316378
Target:  5'- -cCGgAGCGcCCGGCuuccAGCAGCuCCGccUGCa -3'
miRNA:   3'- acGCgUCGU-GGCCG----UCGUCG-GGU--ACG- -5'
30489 5' -60.8 NC_006548.1 + 4913 0.66 0.308617
Target:  5'- cGCGCAauuGCACCGaGCcuugaaGGuCAGC-CAUGCc -3'
miRNA:   3'- aCGCGU---CGUGGC-CG------UC-GUCGgGUACG- -5'
30489 5' -60.8 NC_006548.1 + 29594 0.66 0.308617
Target:  5'- aGCGCuccuGCGgCGgaggugacaGCAGCAGCucccgucaCCAUGCu -3'
miRNA:   3'- aCGCGu---CGUgGC---------CGUCGUCG--------GGUACG- -5'
30489 5' -60.8 NC_006548.1 + 17449 0.66 0.308617
Target:  5'- gGCGuCGGCGCCguGGCcuCGGCCUggGUg -3'
miRNA:   3'- aCGC-GUCGUGG--CCGucGUCGGGuaCG- -5'
30489 5' -60.8 NC_006548.1 + 36268 0.66 0.307849
Target:  5'- gGCGCcGUACCGugaucucGCGGCGGCaCUgagcgAUGCa -3'
miRNA:   3'- aCGCGuCGUGGC-------CGUCGUCG-GG-----UACG- -5'
30489 5' -60.8 NC_006548.1 + 5636 0.66 0.301003
Target:  5'- uUGCGCAa-GCCGGCccGGCcuGGCCUgcGCg -3'
miRNA:   3'- -ACGCGUcgUGGCCG--UCG--UCGGGuaCG- -5'
30489 5' -60.8 NC_006548.1 + 1986 0.66 0.293534
Target:  5'- cGCGCGGCugCaccaggggaucgGGCAcCAGgCCGUGg -3'
miRNA:   3'- aCGCGUCGugG------------CCGUcGUCgGGUACg -5'
30489 5' -60.8 NC_006548.1 + 18246 0.66 0.293534
Target:  5'- gGCGCugacugAGCACUGGCAucccCAGCCauuggGCg -3'
miRNA:   3'- aCGCG------UCGUGGCCGUc---GUCGGgua--CG- -5'
30489 5' -60.8 NC_006548.1 + 20690 0.66 0.289122
Target:  5'- aGCGCgAGCaacuGCUGGCcacccgcgaagcacaGGUGGCCCA-GCa -3'
miRNA:   3'- aCGCG-UCG----UGGCCG---------------UCGUCGGGUaCG- -5'
30489 5' -60.8 NC_006548.1 + 18724 0.66 0.286211
Target:  5'- uUGgGCAGC-CCuGCGGCGGUugucgCCAUGg -3'
miRNA:   3'- -ACgCGUCGuGGcCGUCGUCG-----GGUACg -5'
30489 5' -60.8 NC_006548.1 + 1463 0.66 0.286211
Target:  5'- cGCGCcgaGGCggaucGCCGGCAGUGGagugguagcgcUCCAUGUc -3'
miRNA:   3'- aCGCG---UCG-----UGGCCGUCGUC-----------GGGUACG- -5'
30489 5' -60.8 NC_006548.1 + 12284 0.66 0.286211
Target:  5'- gGCGCacagGGC-CUGGC-GCAGUUUAUGCc -3'
miRNA:   3'- aCGCG----UCGuGGCCGuCGUCGGGUACG- -5'
30489 5' -60.8 NC_006548.1 + 6872 0.66 0.284042
Target:  5'- cUGCGCAGUucggugACCGGCucCGGCgCCAauagcugggauggaUGCa -3'
miRNA:   3'- -ACGCGUCG------UGGCCGucGUCG-GGU--------------ACG- -5'
30489 5' -60.8 NC_006548.1 + 37958 0.66 0.279032
Target:  5'- aGCugGGUGCCGGCGGUgagguAGgCCGUGCc -3'
miRNA:   3'- aCGcgUCGUGGCCGUCG-----UCgGGUACG- -5'
30489 5' -60.8 NC_006548.1 + 22015 0.66 0.279032
Target:  5'- aGCGCAucggugauCACCGGCAGCGGgU--UGCu -3'
miRNA:   3'- aCGCGUc-------GUGGCCGUCGUCgGguACG- -5'
30489 5' -60.8 NC_006548.1 + 13612 0.66 0.279032
Target:  5'- cGCGCAgGCACCGaggaaggucaGCAGCAGagugaUCAacUGCc -3'
miRNA:   3'- aCGCGU-CGUGGC----------CGUCGUCg----GGU--ACG- -5'
30489 5' -60.8 NC_006548.1 + 15153 0.66 0.276907
Target:  5'- cGCGCAG-GCCGGCAagcgcggcggacGCAuccuggacgaguucGCCC-UGCa -3'
miRNA:   3'- aCGCGUCgUGGCCGU------------CGU--------------CGGGuACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.