miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30489 5' -60.8 NC_006548.1 + 37138 1.12 0.000085
Target:  5'- aUGCGCAGCACCGGCAGCAGCCCAUGCg -3'
miRNA:   3'- -ACGCGUCGUGGCCGUCGUCGGGUACG- -5'
30489 5' -60.8 NC_006548.1 + 7758 0.81 0.023511
Target:  5'- uUGCGCAGC-UC-GCGGCAGCUCAUGCg -3'
miRNA:   3'- -ACGCGUCGuGGcCGUCGUCGGGUACG- -5'
30489 5' -60.8 NC_006548.1 + 11748 0.79 0.033577
Target:  5'- aUGCGCGGCGCgCGGCGGC-GCCgGgguUGCg -3'
miRNA:   3'- -ACGCGUCGUG-GCCGUCGuCGGgU---ACG- -5'
30489 5' -60.8 NC_006548.1 + 12866 0.77 0.046459
Target:  5'- cGCGCGGCACUGGCgAGCaauacAGCUCAggUGCc -3'
miRNA:   3'- aCGCGUCGUGGCCG-UCG-----UCGGGU--ACG- -5'
30489 5' -60.8 NC_006548.1 + 15583 0.77 0.049273
Target:  5'- -cCGCAGaccgcuaACUGGCAGCAGCCCGaggGCg -3'
miRNA:   3'- acGCGUCg------UGGCCGUCGUCGGGUa--CG- -5'
30489 5' -60.8 NC_006548.1 + 13282 0.75 0.067962
Target:  5'- gGCGCAGCACCaGguGCcGCUCGguagGCg -3'
miRNA:   3'- aCGCGUCGUGGcCguCGuCGGGUa---CG- -5'
30489 5' -60.8 NC_006548.1 + 21267 0.74 0.074147
Target:  5'- aGCGCAGUgcuACCGGCAGCcugggcGGCCag-GCc -3'
miRNA:   3'- aCGCGUCG---UGGCCGUCG------UCGGguaCG- -5'
30489 5' -60.8 NC_006548.1 + 19415 0.73 0.090742
Target:  5'- aGCGCcaGGCAC--GCAGCAGCaCCGUGUa -3'
miRNA:   3'- aCGCG--UCGUGgcCGUCGUCG-GGUACG- -5'
30489 5' -60.8 NC_006548.1 + 13427 0.73 0.096098
Target:  5'- gGCGuCAGaACCGGCGGCGGgCCAggucGCu -3'
miRNA:   3'- aCGC-GUCgUGGCCGUCGUCgGGUa---CG- -5'
30489 5' -60.8 NC_006548.1 + 13075 0.73 0.098888
Target:  5'- aGCGCAGCGucacccUCGGC-GCGGCCgGUGg -3'
miRNA:   3'- aCGCGUCGU------GGCCGuCGUCGGgUACg -5'
30489 5' -60.8 NC_006548.1 + 30712 0.73 0.098888
Target:  5'- aGCGacCGGCACCGGggcauCAGCAGCCCcuacgaGCg -3'
miRNA:   3'- aCGC--GUCGUGGCC-----GUCGUCGGGua----CG- -5'
30489 5' -60.8 NC_006548.1 + 22588 0.73 0.101753
Target:  5'- gGCgGCuguGCGCCGGUAGUGGUUgGUGCg -3'
miRNA:   3'- aCG-CGu--CGUGGCCGUCGUCGGgUACG- -5'
30489 5' -60.8 NC_006548.1 + 22866 0.72 0.10772
Target:  5'- cGCugaGCAGCACCuGGUAGC-GCCCG-GCc -3'
miRNA:   3'- aCG---CGUCGUGG-CCGUCGuCGGGUaCG- -5'
30489 5' -60.8 NC_006548.1 + 29712 0.72 0.114013
Target:  5'- cGCacCGGCACCgcuGGCAGCGGCaCCA-GCa -3'
miRNA:   3'- aCGc-GUCGUGG---CCGUCGUCG-GGUaCG- -5'
30489 5' -60.8 NC_006548.1 + 1265 0.72 0.12065
Target:  5'- aGCGCccGUACCGGCuuuGCAGCCg--GCu -3'
miRNA:   3'- aCGCGu-CGUGGCCGu--CGUCGGguaCG- -5'
30489 5' -60.8 NC_006548.1 + 26546 0.71 0.127644
Target:  5'- gUGUGCucucgaucauAGCGCCGGaGGCAGUCC-UGCc -3'
miRNA:   3'- -ACGCG----------UCGUGGCCgUCGUCGGGuACG- -5'
30489 5' -60.8 NC_006548.1 + 36010 0.71 0.135011
Target:  5'- gGUGCGGCucgAUCGGC-GC-GCCUAUGCg -3'
miRNA:   3'- aCGCGUCG---UGGCCGuCGuCGGGUACG- -5'
30489 5' -60.8 NC_006548.1 + 36794 0.71 0.138453
Target:  5'- cUGCGaaugaacCAGCGCCaGGC-GCGGCCUuAUGCg -3'
miRNA:   3'- -ACGC-------GUCGUGG-CCGuCGUCGGG-UACG- -5'
30489 5' -60.8 NC_006548.1 + 27233 0.71 0.13884
Target:  5'- cGCGCuGCcgaGGCGGCAGCCaagGCu -3'
miRNA:   3'- aCGCGuCGuggCCGUCGUCGGguaCG- -5'
30489 5' -60.8 NC_006548.1 + 28036 0.71 0.142768
Target:  5'- gGCGCGGC-CCuGCAGgaGGCCUAUGg -3'
miRNA:   3'- aCGCGUCGuGGcCGUCg-UCGGGUACg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.