Results 1 - 20 of 95 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 37138 | 1.12 | 8.5e-05 |
Target: 5'- aUGCGCAGCACCGGCAGCAGCCCAUGCg -3' miRNA: 3'- -ACGCGUCGUGGCCGUCGUCGGGUACG- -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 7758 | 0.81 | 0.023511 |
Target: 5'- uUGCGCAGC-UC-GCGGCAGCUCAUGCg -3' miRNA: 3'- -ACGCGUCGuGGcCGUCGUCGGGUACG- -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 11748 | 0.79 | 0.033577 |
Target: 5'- aUGCGCGGCGCgCGGCGGC-GCCgGgguUGCg -3' miRNA: 3'- -ACGCGUCGUG-GCCGUCGuCGGgU---ACG- -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 12866 | 0.77 | 0.046459 |
Target: 5'- cGCGCGGCACUGGCgAGCaauacAGCUCAggUGCc -3' miRNA: 3'- aCGCGUCGUGGCCG-UCG-----UCGGGU--ACG- -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 15583 | 0.77 | 0.049273 |
Target: 5'- -cCGCAGaccgcuaACUGGCAGCAGCCCGaggGCg -3' miRNA: 3'- acGCGUCg------UGGCCGUCGUCGGGUa--CG- -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 13282 | 0.75 | 0.067962 |
Target: 5'- gGCGCAGCACCaGguGCcGCUCGguagGCg -3' miRNA: 3'- aCGCGUCGUGGcCguCGuCGGGUa---CG- -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 21267 | 0.74 | 0.074147 |
Target: 5'- aGCGCAGUgcuACCGGCAGCcugggcGGCCag-GCc -3' miRNA: 3'- aCGCGUCG---UGGCCGUCG------UCGGguaCG- -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 19415 | 0.73 | 0.090742 |
Target: 5'- aGCGCcaGGCAC--GCAGCAGCaCCGUGUa -3' miRNA: 3'- aCGCG--UCGUGgcCGUCGUCG-GGUACG- -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 13427 | 0.73 | 0.096098 |
Target: 5'- gGCGuCAGaACCGGCGGCGGgCCAggucGCu -3' miRNA: 3'- aCGC-GUCgUGGCCGUCGUCgGGUa---CG- -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 13075 | 0.73 | 0.098888 |
Target: 5'- aGCGCAGCGucacccUCGGC-GCGGCCgGUGg -3' miRNA: 3'- aCGCGUCGU------GGCCGuCGUCGGgUACg -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 30712 | 0.73 | 0.098888 |
Target: 5'- aGCGacCGGCACCGGggcauCAGCAGCCCcuacgaGCg -3' miRNA: 3'- aCGC--GUCGUGGCC-----GUCGUCGGGua----CG- -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 22588 | 0.73 | 0.101753 |
Target: 5'- gGCgGCuguGCGCCGGUAGUGGUUgGUGCg -3' miRNA: 3'- aCG-CGu--CGUGGCCGUCGUCGGgUACG- -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 22866 | 0.72 | 0.10772 |
Target: 5'- cGCugaGCAGCACCuGGUAGC-GCCCG-GCc -3' miRNA: 3'- aCG---CGUCGUGG-CCGUCGuCGGGUaCG- -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 29712 | 0.72 | 0.114013 |
Target: 5'- cGCacCGGCACCgcuGGCAGCGGCaCCA-GCa -3' miRNA: 3'- aCGc-GUCGUGG---CCGUCGUCG-GGUaCG- -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 1265 | 0.72 | 0.12065 |
Target: 5'- aGCGCccGUACCGGCuuuGCAGCCg--GCu -3' miRNA: 3'- aCGCGu-CGUGGCCGu--CGUCGGguaCG- -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 26546 | 0.71 | 0.127644 |
Target: 5'- gUGUGCucucgaucauAGCGCCGGaGGCAGUCC-UGCc -3' miRNA: 3'- -ACGCG----------UCGUGGCCgUCGUCGGGuACG- -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 36010 | 0.71 | 0.135011 |
Target: 5'- gGUGCGGCucgAUCGGC-GC-GCCUAUGCg -3' miRNA: 3'- aCGCGUCG---UGGCCGuCGuCGGGUACG- -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 36794 | 0.71 | 0.138453 |
Target: 5'- cUGCGaaugaacCAGCGCCaGGC-GCGGCCUuAUGCg -3' miRNA: 3'- -ACGC-------GUCGUGG-CCGuCGUCGGG-UACG- -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 27233 | 0.71 | 0.13884 |
Target: 5'- cGCGCuGCcgaGGCGGCAGCCaagGCu -3' miRNA: 3'- aCGCGuCGuggCCGUCGUCGGguaCG- -5' |
|||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 28036 | 0.71 | 0.142768 |
Target: 5'- gGCGCGGC-CCuGCAGgaGGCCUAUGg -3' miRNA: 3'- aCGCGUCGuGGcCGUCg-UCGGGUACg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home