miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30489 5' -60.8 NC_006548.1 + 15583 0.77 0.049273
Target:  5'- -cCGCAGaccgcuaACUGGCAGCAGCCCGaggGCg -3'
miRNA:   3'- acGCGUCg------UGGCCGUCGUCGGGUa--CG- -5'
30489 5' -60.8 NC_006548.1 + 33311 0.67 0.238951
Target:  5'- aGCauGCGGCGCUGcGCAGCcugcuguacGCCC-UGCg -3'
miRNA:   3'- aCG--CGUCGUGGC-CGUCGu--------CGGGuACG- -5'
30489 5' -60.8 NC_006548.1 + 13564 0.68 0.232759
Target:  5'- gGUGCcuGCGCgGGCGGCGGCaagcUGCu -3'
miRNA:   3'- aCGCGu-CGUGgCCGUCGUCGggu-ACG- -5'
30489 5' -60.8 NC_006548.1 + 12944 0.68 0.226702
Target:  5'- aGCGCGGUGCUGuGCGGC-GCagCCGUGg -3'
miRNA:   3'- aCGCGUCGUGGC-CGUCGuCG--GGUACg -5'
30489 5' -60.8 NC_006548.1 + 29441 0.68 0.220779
Target:  5'- cGCGCAGCAgCUGGCccagaaGGCaacugcggGGCUCAUGa -3'
miRNA:   3'- aCGCGUCGU-GGCCG------UCG--------UCGGGUACg -5'
30489 5' -60.8 NC_006548.1 + 19135 0.68 0.220779
Target:  5'- aGCGCAGCGCUGGgAGauccgagcgGGCUUcUGCa -3'
miRNA:   3'- aCGCGUCGUGGCCgUCg--------UCGGGuACG- -5'
30489 5' -60.8 NC_006548.1 + 29656 0.69 0.193116
Target:  5'- cUGCcaGCGGUGCCGGU-GCGGCagGUGCg -3'
miRNA:   3'- -ACG--CGUCGUGGCCGuCGUCGggUACG- -5'
30489 5' -60.8 NC_006548.1 + 14312 0.69 0.182431
Target:  5'- gGCGCaguucccgagccaGGCcgaaGCCGGCgAGCuGCCCAgccgUGCa -3'
miRNA:   3'- aCGCG-------------UCG----UGGCCG-UCGuCGGGU----ACG- -5'
30489 5' -60.8 NC_006548.1 + 33146 0.7 0.159515
Target:  5'- gGcCGguGCuCgGGCAGCGGCCCGa-- -3'
miRNA:   3'- aC-GCguCGuGgCCGUCGUCGGGUacg -5'
30489 5' -60.8 NC_006548.1 + 20512 0.7 0.155169
Target:  5'- gGCGUcGaCGCC-GCAGCAGCCUcUGCc -3'
miRNA:   3'- aCGCGuC-GUGGcCGUCGUCGGGuACG- -5'
30489 5' -60.8 NC_006548.1 + 3597 0.7 0.155169
Target:  5'- gGCGUAGCA--GGUAGCAGCCa--GCg -3'
miRNA:   3'- aCGCGUCGUggCCGUCGUCGGguaCG- -5'
30489 5' -60.8 NC_006548.1 + 14409 0.7 0.150931
Target:  5'- cGUGcCAGCACCgaGGCGGCcaAGCugauCCGUGCc -3'
miRNA:   3'- aCGC-GUCGUGG--CCGUCG--UCG----GGUACG- -5'
30489 5' -60.8 NC_006548.1 + 32971 0.7 0.146798
Target:  5'- gUGCaGCGGCGCUGGcCGGCcGGCUCccGCu -3'
miRNA:   3'- -ACG-CGUCGUGGCC-GUCG-UCGGGuaCG- -5'
30489 5' -60.8 NC_006548.1 + 28036 0.71 0.142768
Target:  5'- gGCGCGGC-CCuGCAGgaGGCCUAUGg -3'
miRNA:   3'- aCGCGUCGuGGcCGUCg-UCGGGUACg -5'
30489 5' -60.8 NC_006548.1 + 27233 0.71 0.13884
Target:  5'- cGCGCuGCcgaGGCGGCAGCCaagGCu -3'
miRNA:   3'- aCGCGuCGuggCCGUCGUCGGguaCG- -5'
30489 5' -60.8 NC_006548.1 + 36794 0.71 0.138453
Target:  5'- cUGCGaaugaacCAGCGCCaGGC-GCGGCCUuAUGCg -3'
miRNA:   3'- -ACGC-------GUCGUGG-CCGuCGUCGGG-UACG- -5'
30489 5' -60.8 NC_006548.1 + 36010 0.71 0.135011
Target:  5'- gGUGCGGCucgAUCGGC-GC-GCCUAUGCg -3'
miRNA:   3'- aCGCGUCG---UGGCCGuCGuCGGGUACG- -5'
30489 5' -60.8 NC_006548.1 + 30712 0.73 0.098888
Target:  5'- aGCGacCGGCACCGGggcauCAGCAGCCCcuacgaGCg -3'
miRNA:   3'- aCGC--GUCGUGGCC-----GUCGUCGGGua----CG- -5'
30489 5' -60.8 NC_006548.1 + 19415 0.73 0.090742
Target:  5'- aGCGCcaGGCAC--GCAGCAGCaCCGUGUa -3'
miRNA:   3'- aCGCG--UCGUGgcCGUCGUCG-GGUACG- -5'
30489 5' -60.8 NC_006548.1 + 7758 0.81 0.023511
Target:  5'- uUGCGCAGC-UC-GCGGCAGCUCAUGCg -3'
miRNA:   3'- -ACGCGUCGuGGcCGUCGUCGGGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.