miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30489 5' -60.8 NC_006548.1 + 838 0.67 0.271302
Target:  5'- gGCGCAGCugGCCGaGaugaGGCuGCCCuggagcuAUGCc -3'
miRNA:   3'- aCGCGUCG--UGGC-Cg---UCGuCGGG-------UACG- -5'
30489 5' -60.8 NC_006548.1 + 929 0.68 0.226702
Target:  5'- aGCGCcuGgGCUGGCAaccaCAGCCCA-GCa -3'
miRNA:   3'- aCGCGu-CgUGGCCGUc---GUCGGGUaCG- -5'
30489 5' -60.8 NC_006548.1 + 1265 0.72 0.12065
Target:  5'- aGCGCccGUACCGGCuuuGCAGCCg--GCu -3'
miRNA:   3'- aCGCGu-CGUGGCCGu--CGUCGGguaCG- -5'
30489 5' -60.8 NC_006548.1 + 1463 0.66 0.286211
Target:  5'- cGCGCcgaGGCggaucGCCGGCAGUGGagugguagcgcUCCAUGUc -3'
miRNA:   3'- aCGCG---UCG-----UGGCCGUCGUC-----------GGGUACG- -5'
30489 5' -60.8 NC_006548.1 + 1986 0.66 0.293534
Target:  5'- cGCGCGGCugCaccaggggaucgGGCAcCAGgCCGUGg -3'
miRNA:   3'- aCGCGUCGugG------------CCGUcGUCgGGUACg -5'
30489 5' -60.8 NC_006548.1 + 2310 0.67 0.271302
Target:  5'- cGCgGCGGCGCCGGagcugacCGGCuacGCCUaccagGUGCu -3'
miRNA:   3'- aCG-CGUCGUGGCC-------GUCGu--CGGG-----UACG- -5'
30489 5' -60.8 NC_006548.1 + 2822 0.67 0.238326
Target:  5'- cGCGUggaccaAGCugggaacauccguACCGGCAGCGugcuuGCCC-UGCg -3'
miRNA:   3'- aCGCG------UCG-------------UGGCCGUCGU-----CGGGuACG- -5'
30489 5' -60.8 NC_006548.1 + 3597 0.7 0.155169
Target:  5'- gGCGUAGCA--GGUAGCAGCCa--GCg -3'
miRNA:   3'- aCGCGUCGUggCCGUCGUCGGguaCG- -5'
30489 5' -60.8 NC_006548.1 + 4287 0.67 0.245281
Target:  5'- gGC-CAGCuCCGGCGuCAGCaCgGUGCa -3'
miRNA:   3'- aCGcGUCGuGGCCGUcGUCG-GgUACG- -5'
30489 5' -60.8 NC_006548.1 + 4346 0.68 0.220779
Target:  5'- cGUGCuGaCGCCGG-AGCuGGCCCgAUGCc -3'
miRNA:   3'- aCGCGuC-GUGGCCgUCG-UCGGG-UACG- -5'
30489 5' -60.8 NC_006548.1 + 4913 0.66 0.308617
Target:  5'- cGCGCAauuGCACCGaGCcuugaaGGuCAGC-CAUGCc -3'
miRNA:   3'- aCGCGU---CGUGGC-CG------UC-GUCGgGUACG- -5'
30489 5' -60.8 NC_006548.1 + 5414 0.67 0.238951
Target:  5'- cGCGCAguuugaugacguGCGCCaGGCAuuugaagaaguGgAGCCCcgGCg -3'
miRNA:   3'- aCGCGU------------CGUGG-CCGU-----------CgUCGGGuaCG- -5'
30489 5' -60.8 NC_006548.1 + 5636 0.66 0.301003
Target:  5'- uUGCGCAa-GCCGGCccGGCcuGGCCUgcGCg -3'
miRNA:   3'- -ACGCGUcgUGGCCG--UCG--UCGGGuaCG- -5'
30489 5' -60.8 NC_006548.1 + 6872 0.66 0.284042
Target:  5'- cUGCGCAGUucggugACCGGCucCGGCgCCAauagcugggauggaUGCa -3'
miRNA:   3'- -ACGCGUCG------UGGCCGucGUCG-GGU--------------ACG- -5'
30489 5' -60.8 NC_006548.1 + 7301 0.71 0.142768
Target:  5'- gGgGCAGCGCaCGGCgcuaugcaaAGCAGCCgCG-GCa -3'
miRNA:   3'- aCgCGUCGUG-GCCG---------UCGUCGG-GUaCG- -5'
30489 5' -60.8 NC_006548.1 + 7758 0.81 0.023511
Target:  5'- uUGCGCAGC-UC-GCGGCAGCUCAUGCg -3'
miRNA:   3'- -ACGCGUCGuGGcCGUCGUCGGGUACG- -5'
30489 5' -60.8 NC_006548.1 + 8006 0.67 0.242099
Target:  5'- cGCGCAGCGCgccggaugaugcaGGCGGC-GCUCAaauaccugucuccUGCa -3'
miRNA:   3'- aCGCGUCGUGg------------CCGUCGuCGGGU-------------ACG- -5'
30489 5' -60.8 NC_006548.1 + 8415 0.71 0.142768
Target:  5'- aGCGuCAGCAUgCuGCAGauagcccaGGCCCAUGCg -3'
miRNA:   3'- aCGC-GUCGUG-GcCGUCg-------UCGGGUACG- -5'
30489 5' -60.8 NC_006548.1 + 9019 0.67 0.258357
Target:  5'- aGCGCGGCACCcaGGUcuucCAGUUCcgGCg -3'
miRNA:   3'- aCGCGUCGUGG--CCGuc--GUCGGGuaCG- -5'
30489 5' -60.8 NC_006548.1 + 11748 0.79 0.033577
Target:  5'- aUGCGCGGCGCgCGGCGGC-GCCgGgguUGCg -3'
miRNA:   3'- -ACGCGUCGUG-GCCGUCGuCGGgU---ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.