Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30489 | 5' | -60.8 | NC_006548.1 | + | 27195 | 0.67 | 0.271998 |
Target: 5'- aGCGCuaucGCGCCaGGCAGUguucCCCGcuUGCa -3' miRNA: 3'- aCGCGu---CGUGG-CCGUCGuc--GGGU--ACG- -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 19374 | 0.67 | 0.271998 |
Target: 5'- aGCGCAGCAggUUGcGCAGguGgCCGUcgaGCg -3' miRNA: 3'- aCGCGUCGU--GGC-CGUCguCgGGUA---CG- -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 29911 | 0.67 | 0.271998 |
Target: 5'- cUGUGCGGCACgcgacgGGCGGCauAGCCaCAUucccGCa -3' miRNA: 3'- -ACGCGUCGUGg-----CCGUCG--UCGG-GUA----CG- -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 12147 | 0.67 | 0.271998 |
Target: 5'- cGCGgGcCGCCGaGCAGUAucGCCgCGUGCu -3' miRNA: 3'- aCGCgUcGUGGC-CGUCGU--CGG-GUACG- -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 20914 | 0.67 | 0.271998 |
Target: 5'- cUGCGCAGCuuGCUGGCcGaacuGCCCAa-- -3' miRNA: 3'- -ACGCGUCG--UGGCCGuCgu--CGGGUacg -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 2310 | 0.67 | 0.271302 |
Target: 5'- cGCgGCGGCGCCGGagcugacCGGCuacGCCUaccagGUGCu -3' miRNA: 3'- aCG-CGUCGUGGCC-------GUCGu--CGGG-----UACG- -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 838 | 0.67 | 0.271302 |
Target: 5'- gGCGCAGCugGCCGaGaugaGGCuGCCCuggagcuAUGCc -3' miRNA: 3'- aCGCGUCG--UGGC-Cg---UCGuCGGG-------UACG- -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 27303 | 0.67 | 0.258357 |
Target: 5'- aGCaGCAGCcUUGGCuGCcGCCUcgGCa -3' miRNA: 3'- aCG-CGUCGuGGCCGuCGuCGGGuaCG- -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 9019 | 0.67 | 0.258357 |
Target: 5'- aGCGCGGCACCcaGGUcuucCAGUUCcgGCg -3' miRNA: 3'- aCGCGUCGUGG--CCGuc--GUCGGGuaCG- -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 22067 | 0.67 | 0.258357 |
Target: 5'- gGCGguGCGaCGGCccAGCAcGCCgAUGUu -3' miRNA: 3'- aCGCguCGUgGCCG--UCGU-CGGgUACG- -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 36898 | 0.67 | 0.258357 |
Target: 5'- gGCGCAccGCaACCGGCugcuGCAGgCCGUc- -3' miRNA: 3'- aCGCGU--CG-UGGCCGu---CGUCgGGUAcg -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 23821 | 0.67 | 0.251749 |
Target: 5'- gGCGCGaC-CCGGCAGaUGGCaaaCGUGCa -3' miRNA: 3'- aCGCGUcGuGGCCGUC-GUCGg--GUACG- -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 12833 | 0.67 | 0.251749 |
Target: 5'- gGCGCGGUAaguCCGGU-GUGGCUCggGCg -3' miRNA: 3'- aCGCGUCGU---GGCCGuCGUCGGGuaCG- -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 30915 | 0.67 | 0.245281 |
Target: 5'- cUGCuGCccGCAUaaCGGCcGCAGCCCA-GCg -3' miRNA: 3'- -ACG-CGu-CGUG--GCCGuCGUCGGGUaCG- -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 4287 | 0.67 | 0.245281 |
Target: 5'- gGC-CAGCuCCGGCGuCAGCaCgGUGCa -3' miRNA: 3'- aCGcGUCGuGGCCGUcGUCG-GgUACG- -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 34439 | 0.67 | 0.245281 |
Target: 5'- gGUGCcgcccacaAGgACCaGGCGGUuGCCCGUGUg -3' miRNA: 3'- aCGCG--------UCgUGG-CCGUCGuCGGGUACG- -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 38208 | 0.67 | 0.245281 |
Target: 5'- aGCGCGaauGCAUCGaGCAGCucGGCCgAuucuUGCg -3' miRNA: 3'- aCGCGU---CGUGGC-CGUCG--UCGGgU----ACG- -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 8006 | 0.67 | 0.242099 |
Target: 5'- cGCGCAGCGCgccggaugaugcaGGCGGC-GCUCAaauaccugucuccUGCa -3' miRNA: 3'- aCGCGUCGUGg------------CCGUCGuCGGGU-------------ACG- -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 33311 | 0.67 | 0.238951 |
Target: 5'- aGCauGCGGCGCUGcGCAGCcugcuguacGCCC-UGCg -3' miRNA: 3'- aCG--CGUCGUGGC-CGUCGu--------CGGGuACG- -5' |
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30489 | 5' | -60.8 | NC_006548.1 | + | 5414 | 0.67 | 0.238951 |
Target: 5'- cGCGCAguuugaugacguGCGCCaGGCAuuugaagaaguGgAGCCCcgGCg -3' miRNA: 3'- aCGCGU------------CGUGG-CCGU-----------CgUCGGGuaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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