miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30491 5' -59.2 NC_006548.1 + 35875 0.71 0.184617
Target:  5'- aUGCCGgCGCgAUCCgcgcggcCGGCGGCg- -3'
miRNA:   3'- -ACGGCgGCGgUAGGaaa----GCCGUCGac -5'
30491 5' -59.2 NC_006548.1 + 19396 0.71 0.179636
Target:  5'- aGCuCGCUGCCGUCCagcUGGUAGCg- -3'
miRNA:   3'- aCG-GCGGCGGUAGGaaaGCCGUCGac -5'
30491 5' -59.2 NC_006548.1 + 32424 0.73 0.125012
Target:  5'- cGCCGuuGCCGUUCg--CGGC-GCUGc -3'
miRNA:   3'- aCGGCggCGGUAGGaaaGCCGuCGAC- -5'
30491 5' -59.2 NC_006548.1 + 18521 0.74 0.108431
Target:  5'- cGUgGCCGCCggGUCCaugUCGGCAcGCUGu -3'
miRNA:   3'- aCGgCGGCGG--UAGGaa-AGCCGU-CGAC- -5'
30491 5' -59.2 NC_006548.1 + 29650 0.75 0.08866
Target:  5'- gUGCCGCUGCCAgcggugCCggugCGGCAGgUGc -3'
miRNA:   3'- -ACGGCGGCGGUa-----GGaaa-GCCGUCgAC- -5'
30491 5' -59.2 NC_006548.1 + 552 1.07 0.000285
Target:  5'- cUGCCGCCGCCAUCCUUUCGGCAGCUGu -3'
miRNA:   3'- -ACGGCGGCGGUAGGAAAGCCGUCGAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.