miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30491 5' -59.2 NC_006548.1 + 33704 0.68 0.282088
Target:  5'- cGCUGUCGCUGUCCUgcCGGCAa--- -3'
miRNA:   3'- aCGGCGGCGGUAGGAaaGCCGUcgac -5'
30491 5' -59.2 NC_006548.1 + 29744 0.68 0.282088
Target:  5'- aGCCaGCCGCCA-CUac-CGGCAGCc- -3'
miRNA:   3'- aCGG-CGGCGGUaGGaaaGCCGUCGac -5'
30491 5' -59.2 NC_006548.1 + 22614 0.68 0.261116
Target:  5'- gGCCGUCGaUCAggcucUCCUccgcCGGCGGCUGu -3'
miRNA:   3'- aCGGCGGC-GGU-----AGGAaa--GCCGUCGAC- -5'
30491 5' -59.2 NC_006548.1 + 27291 0.69 0.247852
Target:  5'- gGCUGCCGCC------UCGGCAGCg- -3'
miRNA:   3'- aCGGCGGCGGuaggaaAGCCGUCGac -5'
30491 5' -59.2 NC_006548.1 + 19396 0.71 0.179636
Target:  5'- aGCuCGCUGCCGUCCagcUGGUAGCg- -3'
miRNA:   3'- aCG-GCGGCGGUAGGaaaGCCGUCGac -5'
30491 5' -59.2 NC_006548.1 + 21014 0.66 0.391871
Target:  5'- cGCCGUCGCCGgauuucucggaaaagUCCaccugUUUgGGCAGUUc -3'
miRNA:   3'- aCGGCGGCGGU---------------AGG-----AAAgCCGUCGAc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.