miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30492 5' -57.2 NC_006548.1 + 27394 0.69 0.335806
Target:  5'- gCUCCUGCUCGGCcagGCGagcgagagaGCGCUgaGUCg -3'
miRNA:   3'- aGAGGACGAGCUGca-CGU---------UGCGG--CGG- -5'
30492 5' -57.2 NC_006548.1 + 22600 0.66 0.484847
Target:  5'- cUCUCCUccGC-CGGCG-GCuguGCGCCGgUa -3'
miRNA:   3'- -AGAGGA--CGaGCUGCaCGu--UGCGGCgG- -5'
30492 5' -57.2 NC_006548.1 + 29429 0.66 0.509895
Target:  5'- cCUCCUGCagcgacagggugccaUCGGCGagaccgcGCAGCGCauccugcaUGCCa -3'
miRNA:   3'- aGAGGACG---------------AGCUGCa------CGUUGCG--------GCGG- -5'
30492 5' -57.2 NC_006548.1 + 13737 0.66 0.526891
Target:  5'- --gCCUGCUCGAUG-GCGuccaGCCGgUa -3'
miRNA:   3'- agaGGACGAGCUGCaCGUug--CGGCgG- -5'
30492 5' -57.2 NC_006548.1 + 16545 0.67 0.464431
Target:  5'- gCUgCUGCUCcAgGUGCucUGCCGCa -3'
miRNA:   3'- aGAgGACGAGcUgCACGuuGCGGCGg -5'
30492 5' -57.2 NC_006548.1 + 31510 0.75 0.139835
Target:  5'- --aCCUGCcgcgaucUCGACGUGCAggugcagauAgGCCGCCg -3'
miRNA:   3'- agaGGACG-------AGCUGCACGU---------UgCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 2328 0.74 0.161134
Target:  5'- gUUCCUGUUCGuCGgcugcGCGGCGgCGCCg -3'
miRNA:   3'- aGAGGACGAGCuGCa----CGUUGCgGCGG- -5'
30492 5' -57.2 NC_006548.1 + 14728 0.72 0.22907
Target:  5'- cCUUCUGCUCaGCGaGCAGCGCCugGCg -3'
miRNA:   3'- aGAGGACGAGcUGCaCGUUGCGG--CGg -5'
30492 5' -57.2 NC_006548.1 + 18962 0.72 0.235193
Target:  5'- uUUUCCUGcCUUGACGUccuugGCcACGuCCGCCc -3'
miRNA:   3'- -AGAGGAC-GAGCUGCA-----CGuUGC-GGCGG- -5'
30492 5' -57.2 NC_006548.1 + 33694 0.66 0.483816
Target:  5'- -gUCCUGCcggcaaagUGucaugaaugagauGCGUGCGACGUCGCUc -3'
miRNA:   3'- agAGGACGa-------GC-------------UGCACGUUGCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 11751 0.67 0.464431
Target:  5'- -gUCaUGCgCGGCGcGCGGCGgCGCCg -3'
miRNA:   3'- agAGgACGaGCUGCaCGUUGCgGCGG- -5'
30492 5' -57.2 NC_006548.1 + 4135 0.67 0.464431
Target:  5'- gUCagCCUGCUCGGCGU-CGAUGUgGgCu -3'
miRNA:   3'- -AGa-GGACGAGCUGCAcGUUGCGgCgG- -5'
30492 5' -57.2 NC_006548.1 + 32490 0.69 0.352508
Target:  5'- gCUCCUGCagCGccgcgaacggcaACGgcgGCGACGgCUGCCg -3'
miRNA:   3'- aGAGGACGa-GC------------UGCa--CGUUGC-GGCGG- -5'
30492 5' -57.2 NC_006548.1 + 35049 0.67 0.473564
Target:  5'- --cCCauUGCUCGccuccgcACGUGCGugGCUGaCCa -3'
miRNA:   3'- agaGG--ACGAGC-------UGCACGUugCGGC-GG- -5'
30492 5' -57.2 NC_006548.1 + 27877 0.69 0.352508
Target:  5'- gUUUCCUGgCgggUGAgGUGCAGCGCaguggugGCCg -3'
miRNA:   3'- -AGAGGAC-Ga--GCUgCACGUUGCGg------CGG- -5'
30492 5' -57.2 NC_006548.1 + 16990 0.67 0.464431
Target:  5'- --gUCUGUaUGGCaUGCAGgGCCGCCa -3'
miRNA:   3'- agaGGACGaGCUGcACGUUgCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 13369 0.67 0.474584
Target:  5'- gCUCCUGC--GGCGgGCAAacCGgCGCCg -3'
miRNA:   3'- aGAGGACGagCUGCaCGUU--GCgGCGG- -5'
30492 5' -57.2 NC_006548.1 + 29227 0.66 0.505682
Target:  5'- cUCUaCCUGgUCGGCGguagaccgaUGCAGgucuagcaguUGCUGCCg -3'
miRNA:   3'- -AGA-GGACgAGCUGC---------ACGUU----------GCGGCGG- -5'
30492 5' -57.2 NC_006548.1 + 9562 0.67 0.433702
Target:  5'- cCUCCUGCUgGugGaccgaaccguUGCAucaccagGCGCCgaacGCCu -3'
miRNA:   3'- aGAGGACGAgCugC----------ACGU-------UGCGG----CGG- -5'
30492 5' -57.2 NC_006548.1 + 22158 0.67 0.464431
Target:  5'- gCUCCUGCaggaaggccaUCGGCaccaUGCccuCGUCGCCg -3'
miRNA:   3'- aGAGGACG----------AGCUGc---ACGuu-GCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.