miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30494 3' -55.4 NC_006548.1 + 14324 0.76 0.161781
Target:  5'- ----gGGUCAUCCGGCcaUCGGCCAGGCg -3'
miRNA:   3'- cgccgCUAGUAGGCCG--AGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 22320 0.66 0.600233
Target:  5'- -gGGCGGUCAggCCGaagguggugccguuGCgggugUCGGCCAGGCg -3'
miRNA:   3'- cgCCGCUAGUa-GGC--------------CG-----AGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 7144 0.66 0.614875
Target:  5'- cUGGUGAUCAgcaCGGCguugauccacUCGGCCcGACa -3'
miRNA:   3'- cGCCGCUAGUag-GCCG----------AGUUGGuCUG- -5'
30494 3' -55.4 NC_006548.1 + 17358 0.66 0.626157
Target:  5'- uGCGGaacaccuuuUCAUCCcGCUCGGCCuuGGCg -3'
miRNA:   3'- -CGCCgcu------AGUAGGcCGAGUUGGu-CUG- -5'
30494 3' -55.4 NC_006548.1 + 20012 0.7 0.366743
Target:  5'- cGCGGCGAUC-UCCugcaggauGGCcUCGgugaacuccACCGGGCg -3'
miRNA:   3'- -CGCCGCUAGuAGG--------CCG-AGU---------UGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 32464 0.7 0.394035
Target:  5'- gGCGGCGA-----CGGCUgcCGGCCAGGCu -3'
miRNA:   3'- -CGCCGCUaguagGCCGA--GUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 27417 0.68 0.461549
Target:  5'- cCGGaaaugcuCGGUCAacugccgcUCCuGCUCGGCCAGGCg -3'
miRNA:   3'- cGCC-------GCUAGU--------AGGcCGAGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 35430 0.68 0.462573
Target:  5'- uUGaGCGcUCGUcgccaCCGGCUCAuCCAGGCu -3'
miRNA:   3'- cGC-CGCuAGUA-----GGCCGAGUuGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 27586 0.67 0.525971
Target:  5'- cCGGCGAUg--CCGGCgaacagCAGCCccuGGACc -3'
miRNA:   3'- cGCCGCUAguaGGCCGa-----GUUGG---UCUG- -5'
30494 3' -55.4 NC_006548.1 + 14395 0.66 0.592367
Target:  5'- aCGGCuGggCAgcucgCCGGCuUCGGCCuGGCu -3'
miRNA:   3'- cGCCG-CuaGUa----GGCCG-AGUUGGuCUG- -5'
30494 3' -55.4 NC_006548.1 + 31717 0.66 0.581162
Target:  5'- -gGGCGAggggccgcCAUCCaGGC-CAuCCAGGCg -3'
miRNA:   3'- cgCCGCUa-------GUAGG-CCGaGUuGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 16305 0.68 0.493807
Target:  5'- gGUGGCGAUCucCCGGCcaaGGgCGGGCu -3'
miRNA:   3'- -CGCCGCUAGuaGGCCGag-UUgGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 20847 0.71 0.316175
Target:  5'- cGCGGCag-CAggcggCCGGcCUUGACCAGGCc -3'
miRNA:   3'- -CGCCGcuaGUa----GGCC-GAGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 32713 0.66 0.581162
Target:  5'- cGCaGCGAUCG-CCGuuGCUCGACUcccGACg -3'
miRNA:   3'- -CGcCGCUAGUaGGC--CGAGUUGGu--CUG- -5'
30494 3' -55.4 NC_006548.1 + 33665 0.71 0.316175
Target:  5'- uGCGuGCGA-CGUC--GCUCGGCCGGACa -3'
miRNA:   3'- -CGC-CGCUaGUAGgcCGAGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 21631 0.68 0.46977
Target:  5'- cGCGGCagaaccucgucggaGAUCAUCCGGC-CGuuGCggUAGGCg -3'
miRNA:   3'- -CGCCG--------------CUAGUAGGCCGaGU--UG--GUCUG- -5'
30494 3' -55.4 NC_006548.1 + 16647 0.66 0.581162
Target:  5'- uGUaGCGGUCGUCgCGGCcguagaUCAGCuCGGAUa -3'
miRNA:   3'- -CGcCGCUAGUAG-GCCG------AGUUG-GUCUG- -5'
30494 3' -55.4 NC_006548.1 + 24524 0.66 0.614875
Target:  5'- aGUGGCGGUCuugCCGcGCUgCAAgCGGcCa -3'
miRNA:   3'- -CGCCGCUAGua-GGC-CGA-GUUgGUCuG- -5'
30494 3' -55.4 NC_006548.1 + 11970 0.71 0.324225
Target:  5'- -aGGaCGAUCAgcgagCGGCgCAGCCAGGCa -3'
miRNA:   3'- cgCC-GCUAGUag---GCCGaGUUGGUCUG- -5'
30494 3' -55.4 NC_006548.1 + 4488 0.7 0.394035
Target:  5'- cGCGGCGAUgaAUCUGGCggugCAugUcGGCg -3'
miRNA:   3'- -CGCCGCUAg-UAGGCCGa---GUugGuCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.