Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30494 | 5' | -58.3 | NC_006548.1 | + | 13128 | 0.66 | 0.44168 |
Target: 5'- cCAgGCCgAGGAGCaacuGCUGCAGguacAGCa -3' miRNA: 3'- aGUgCGG-UCCUCGgc--CGACGUU----UCGg -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 21351 | 0.66 | 0.422189 |
Target: 5'- -gACGcCCAGGGGCgagCGGUUGCcgcgacucuGCCg -3' miRNA: 3'- agUGC-GGUCCUCG---GCCGACGuuu------CGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 32868 | 0.66 | 0.422189 |
Target: 5'- uUCGUGCUGGGGGCCuugcgcuGCUGCGcgguGAGUCa -3' miRNA: 3'- -AGUGCGGUCCUCGGc------CGACGU----UUCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 20998 | 0.66 | 0.43187 |
Target: 5'- cUCACGCCAuuGcAGCgCGaGC-GCAGAGCUa -3' miRNA: 3'- -AGUGCGGU--CcUCG-GC-CGaCGUUUCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 22720 | 0.66 | 0.43187 |
Target: 5'- -gGCGCagaAGGugcucguGCCGGCcgGCGAugaaguGGCCa -3' miRNA: 3'- agUGCGg--UCCu------CGGCCGa-CGUU------UCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 33118 | 0.66 | 0.435779 |
Target: 5'- gUCAUGCCcucgacaacauaccgGGGcuGGCCGGUgcucggGCAGcGGCCc -3' miRNA: 3'- -AGUGCGG---------------UCC--UCGGCCGa-----CGUU-UCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 12590 | 0.66 | 0.403225 |
Target: 5'- cCAgGCCAGcuGGUCGGCgccggaUGCcGAGGCCa -3' miRNA: 3'- aGUgCGGUCc-UCGGCCG------ACG-UUUCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 362 | 0.66 | 0.409801 |
Target: 5'- aUCACGUUuguuuuuccggucaAGGAugaGCUGGCUcGCAAGcGCCu -3' miRNA: 3'- -AGUGCGG--------------UCCU---CGGCCGA-CGUUU-CGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 37779 | 0.66 | 0.422189 |
Target: 5'- -gACGCCGGucGCCGGCacUGUgauGAGCg -3' miRNA: 3'- agUGCGGUCcuCGGCCG--ACGu--UUCGg -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 20890 | 0.66 | 0.422189 |
Target: 5'- gUCACaaaGCCGGcGGCCGagguGCUGCGcAGCUu -3' miRNA: 3'- -AGUG---CGGUCcUCGGC----CGACGUuUCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 36611 | 0.66 | 0.419311 |
Target: 5'- cUCGCGCgGGGAugcgucgauacgguGCCaGCgccGCAugAGGCCg -3' miRNA: 3'- -AGUGCGgUCCU--------------CGGcCGa--CGU--UUCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 22196 | 0.66 | 0.416444 |
Target: 5'- uUCGCGCCuGGGGGCCGcacGCgucuuucaucuaccGCGAucgccuGGCCg -3' miRNA: 3'- -AGUGCGG-UCCUCGGC---CGa-------------CGUU------UCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 15487 | 0.66 | 0.403225 |
Target: 5'- aUCAUGCCcuGGAucucaucgucgGCCGGCaGCAucuGCUg -3' miRNA: 3'- -AGUGCGGu-CCU-----------CGGCCGaCGUuu-CGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 25644 | 0.66 | 0.44168 |
Target: 5'- --uCGCCGGGGGagaGGaaGCAAAGCg -3' miRNA: 3'- aguGCGGUCCUCgg-CCgaCGUUUCGg -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 7695 | 0.66 | 0.440693 |
Target: 5'- gCGcCGCCAGGuggaaaccaugacGGCCGaccagcGCgcgGCAGAGCUg -3' miRNA: 3'- aGU-GCGGUCC-------------UCGGC------CGa--CGUUUCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 37545 | 0.66 | 0.403225 |
Target: 5'- -gGCGCCGGcgguuGGGCUgaguGGaCUGUggGGCCa -3' miRNA: 3'- agUGCGGUC-----CUCGG----CC-GACGuuUCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 24312 | 0.66 | 0.41264 |
Target: 5'- -aGgGCCGGGucugGGCCGGCgaGCGccuGCCc -3' miRNA: 3'- agUgCGGUCC----UCGGCCGa-CGUuu-CGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 28704 | 0.66 | 0.41264 |
Target: 5'- cUACGgCAaGGGCCgGGCUGCGuuGCg -3' miRNA: 3'- aGUGCgGUcCUCGG-CCGACGUuuCGg -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 36857 | 0.66 | 0.43187 |
Target: 5'- cCGCGCCuGGcGCUGGUUcauucGCAgcGAGUCg -3' miRNA: 3'- aGUGCGGuCCuCGGCCGA-----CGU--UUCGG- -5' |
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30494 | 5' | -58.3 | NC_006548.1 | + | 29653 | 0.66 | 0.403225 |
Target: 5'- cCGCuGCCAGcGGuGCCGGUgcgGCAGgugcGGCUg -3' miRNA: 3'- aGUG-CGGUC-CU-CGGCCGa--CGUU----UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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