miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30494 5' -58.3 NC_006548.1 + 362 0.66 0.409801
Target:  5'- aUCACGUUuguuuuuccggucaAGGAugaGCUGGCUcGCAAGcGCCu -3'
miRNA:   3'- -AGUGCGG--------------UCCU---CGGCCGA-CGUUU-CGG- -5'
30494 5' -58.3 NC_006548.1 + 1189 1.12 0.000152
Target:  5'- uUCACGCCAGGAGCCGGCUGCAAAGCCg -3'
miRNA:   3'- -AGUGCGGUCCUCGGCCGACGUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 1201 0.66 0.43187
Target:  5'- aUCGcCGCaCAGGcguuGCUGGCcgcGCAGacGGCCa -3'
miRNA:   3'- -AGU-GCG-GUCCu---CGGCCGa--CGUU--UCGG- -5'
30494 5' -58.3 NC_006548.1 + 1461 0.71 0.214772
Target:  5'- aUCGCGCCGaggcGGAucGCCGGCaGUGGAGUg -3'
miRNA:   3'- -AGUGCGGU----CCU--CGGCCGaCGUUUCGg -5'
30494 5' -58.3 NC_006548.1 + 2371 0.7 0.231426
Target:  5'- cCAgGCCGGcgguuuuccauccGAGCCGGCUGgAAcccuggcuucgccAGCCa -3'
miRNA:   3'- aGUgCGGUC-------------CUCGGCCGACgUU-------------UCGG- -5'
30494 5' -58.3 NC_006548.1 + 2472 0.69 0.286497
Target:  5'- gCugGCCAGca--UGGCUgGCGAAGCCa -3'
miRNA:   3'- aGugCGGUCcucgGCCGA-CGUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 3303 0.68 0.309083
Target:  5'- aUCAgGCuCGGGucaUGaGCUGCAGAGCCc -3'
miRNA:   3'- -AGUgCG-GUCCucgGC-CGACGUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 3980 0.7 0.251777
Target:  5'- uUCGCGaaggaCCAGGAGCUGGUggaGCuGAAGaCCa -3'
miRNA:   3'- -AGUGC-----GGUCCUCGGCCGa--CG-UUUC-GG- -5'
30494 5' -58.3 NC_006548.1 + 4340 0.68 0.309083
Target:  5'- -gACGCC-GGAGCUGGCccgaUGCcuggauGCCg -3'
miRNA:   3'- agUGCGGuCCUCGGCCG----ACGuuu---CGG- -5'
30494 5' -58.3 NC_006548.1 + 5572 0.71 0.209078
Target:  5'- gCAgGCCAGGccgGGCCGGCUugcGCAAcuGGUUg -3'
miRNA:   3'- aGUgCGGUCC---UCGGCCGA---CGUU--UCGG- -5'
30494 5' -58.3 NC_006548.1 + 6082 0.69 0.258433
Target:  5'- uUCGCGCCAGGGGUugCGGgUGaucAGCa -3'
miRNA:   3'- -AGUGCGGUCCUCG--GCCgACguuUCGg -5'
30494 5' -58.3 NC_006548.1 + 6297 0.7 0.23889
Target:  5'- -uGCGCCuau-GCCGGCUGUGuacGGCCg -3'
miRNA:   3'- agUGCGGuccuCGGCCGACGUu--UCGG- -5'
30494 5' -58.3 NC_006548.1 + 6567 0.71 0.197543
Target:  5'- gCACGCCGuGGAGCauguCGGCuccaccacgcucuUGCAuGGCCu -3'
miRNA:   3'- aGUGCGGU-CCUCG----GCCG-------------ACGUuUCGG- -5'
30494 5' -58.3 NC_006548.1 + 6938 0.76 0.09272
Target:  5'- -gGCGCC-GGAGCCGGUcaccgaacUGCGcAGCCu -3'
miRNA:   3'- agUGCGGuCCUCGGCCG--------ACGUuUCGG- -5'
30494 5' -58.3 NC_006548.1 + 7188 0.66 0.43187
Target:  5'- -gGCGCaAGGAcUCGGg-GCAGAGCCg -3'
miRNA:   3'- agUGCGgUCCUcGGCCgaCGUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 7312 0.67 0.393948
Target:  5'- -aGCGCCggucAGGGGCagcgcaCGGCgcuaUGCAAAGCa -3'
miRNA:   3'- agUGCGG----UCCUCG------GCCG----ACGUUUCGg -5'
30494 5' -58.3 NC_006548.1 + 7695 0.66 0.440693
Target:  5'- gCGcCGCCAGGuggaaaccaugacGGCCGaccagcGCgcgGCAGAGCUg -3'
miRNA:   3'- aGU-GCGGUCC-------------UCGGC------CGa--CGUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 9952 0.66 0.439708
Target:  5'- gCAUuaCAGGAGCCaccgccauggccGCUGCAaccaAAGCCc -3'
miRNA:   3'- aGUGcgGUCCUCGGc-----------CGACGU----UUCGG- -5'
30494 5' -58.3 NC_006548.1 + 12590 0.66 0.403225
Target:  5'- cCAgGCCAGcuGGUCGGCgccggaUGCcGAGGCCa -3'
miRNA:   3'- aGUgCGGUCc-UCGGCCG------ACG-UUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 13128 0.66 0.44168
Target:  5'- cCAgGCCgAGGAGCaacuGCUGCAGguacAGCa -3'
miRNA:   3'- aGUgCGG-UCCUCGgc--CGACGUU----UCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.