miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30494 5' -58.3 NC_006548.1 + 22854 0.73 0.159008
Target:  5'- aUCugGuCCAGGAggaucucgaagcGCUGGCUGCAGcuuGCUa -3'
miRNA:   3'- -AGugC-GGUCCU------------CGGCCGACGUUu--CGG- -5'
30494 5' -58.3 NC_006548.1 + 16966 0.67 0.35825
Target:  5'- cUCAUGCCc---GCCGGCaugcagGCGGAGCUg -3'
miRNA:   3'- -AGUGCGGuccuCGGCCGa-----CGUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 27625 0.67 0.349687
Target:  5'- -gGCaGCUAcGGGGUCGGCgGCGAAGgCg -3'
miRNA:   3'- agUG-CGGU-CCUCGGCCGaCGUUUCgG- -5'
30494 5' -58.3 NC_006548.1 + 22538 0.67 0.349687
Target:  5'- -gGCGCaCAGccGCCGGCggaGgAGAGCCu -3'
miRNA:   3'- agUGCG-GUCcuCGGCCGa--CgUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 3303 0.68 0.309083
Target:  5'- aUCAgGCuCGGGucaUGaGCUGCAGAGCCc -3'
miRNA:   3'- -AGUgCG-GUCCucgGC-CGACGUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 30767 0.69 0.29239
Target:  5'- aUCcCGCCGGGcGCUGGCUcgguuucacugucGCAGgugggucAGCCa -3'
miRNA:   3'- -AGuGCGGUCCuCGGCCGA-------------CGUU-------UCGG- -5'
30494 5' -58.3 NC_006548.1 + 6082 0.69 0.258433
Target:  5'- uUCGCGCCAGGGGUugCGGgUGaucAGCa -3'
miRNA:   3'- -AGUGCGGUCCUCG--GCCgACguuUCGg -5'
30494 5' -58.3 NC_006548.1 + 14325 0.7 0.245264
Target:  5'- ---aGCCAGGccgaAGCCGGCgagcUGCccAGCCg -3'
miRNA:   3'- agugCGGUCC----UCGGCCG----ACGuuUCGG- -5'
30494 5' -58.3 NC_006548.1 + 6297 0.7 0.23889
Target:  5'- -uGCGCCuau-GCCGGCUGUGuacGGCCg -3'
miRNA:   3'- agUGCGGuccuCGGCCGACGUu--UCGG- -5'
30494 5' -58.3 NC_006548.1 + 32643 0.7 0.232656
Target:  5'- gCACGUCGGGAGUCGaGCaacgGCGAucGCUg -3'
miRNA:   3'- aGUGCGGUCCUCGGC-CGa---CGUUu-CGG- -5'
30494 5' -58.3 NC_006548.1 + 2371 0.7 0.231426
Target:  5'- cCAgGCCGGcgguuuuccauccGAGCCGGCUGgAAcccuggcuucgccAGCCa -3'
miRNA:   3'- aGUgCGGUC-------------CUCGGCCGACgUU-------------UCGG- -5'
30494 5' -58.3 NC_006548.1 + 34076 0.7 0.226559
Target:  5'- aCugGCCGGccgacAGCCGGgUGCAGAucaaauGCCg -3'
miRNA:   3'- aGugCGGUCc----UCGGCCgACGUUU------CGG- -5'
30494 5' -58.3 NC_006548.1 + 1461 0.71 0.214772
Target:  5'- aUCGCGCCGaggcGGAucGCCGGCaGUGGAGUg -3'
miRNA:   3'- -AGUGCGGU----CCU--CGGCCGaCGUUUCGg -5'
30494 5' -58.3 NC_006548.1 + 28612 0.71 0.209078
Target:  5'- uUCACGCCAucAGgCGGCgaaGaCAAAGCCg -3'
miRNA:   3'- -AGUGCGGUccUCgGCCGa--C-GUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 5572 0.71 0.209078
Target:  5'- gCAgGCCAGGccgGGCCGGCUugcGCAAcuGGUUg -3'
miRNA:   3'- aGUgCGGUCC---UCGGCCGA---CGUU--UCGG- -5'
30494 5' -58.3 NC_006548.1 + 6567 0.71 0.197543
Target:  5'- gCACGCCGuGGAGCauguCGGCuccaccacgcucuUGCAuGGCCu -3'
miRNA:   3'- aGUGCGGU-CCUCG----GCCG-------------ACGUuUCGG- -5'
30494 5' -58.3 NC_006548.1 + 14661 0.71 0.192772
Target:  5'- gCGCGCCAGGcGCUGcucGCUGagcagAAGGCCa -3'
miRNA:   3'- aGUGCGGUCCuCGGC---CGACg----UUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 23753 0.72 0.187589
Target:  5'- gCACGCCAGcAGCCuauguGCUGCu-GGCCc -3'
miRNA:   3'- aGUGCGGUCcUCGGc----CGACGuuUCGG- -5'
30494 5' -58.3 NC_006548.1 + 13900 0.72 0.16807
Target:  5'- cCugGCCAaGAcCCGGC-GCGAAGCCc -3'
miRNA:   3'- aGugCGGUcCUcGGCCGaCGUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 1189 1.12 0.000152
Target:  5'- uUCACGCCAGGAGCCGGCUGCAAAGCCg -3'
miRNA:   3'- -AGUGCGGUCCUCGGCCGACGUUUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.