miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30494 5' -58.3 NC_006548.1 + 1189 1.12 0.000152
Target:  5'- uUCACGCCAGGAGCCGGCUGCAAAGCCg -3'
miRNA:   3'- -AGUGCGGUCCUCGGCCGACGUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 27975 0.78 0.06932
Target:  5'- aCGCGCCGGGAacgcgcugGCCGaGCUGCAGaacuAGCUc -3'
miRNA:   3'- aGUGCGGUCCU--------CGGC-CGACGUU----UCGG- -5'
30494 5' -58.3 NC_006548.1 + 6938 0.76 0.09272
Target:  5'- -gGCGCC-GGAGCCGGUcaccgaacUGCGcAGCCu -3'
miRNA:   3'- agUGCGGuCCUCGGCCG--------ACGUuUCGG- -5'
30494 5' -58.3 NC_006548.1 + 22854 0.73 0.159008
Target:  5'- aUCugGuCCAGGAggaucucgaagcGCUGGCUGCAGcuuGCUa -3'
miRNA:   3'- -AGugC-GGUCCU------------CGGCCGACGUUu--CGG- -5'
30494 5' -58.3 NC_006548.1 + 13900 0.72 0.16807
Target:  5'- cCugGCCAaGAcCCGGC-GCGAAGCCc -3'
miRNA:   3'- aGugCGGUcCUcGGCCGaCGUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 23753 0.72 0.187589
Target:  5'- gCACGCCAGcAGCCuauguGCUGCu-GGCCc -3'
miRNA:   3'- aGUGCGGUCcUCGGc----CGACGuuUCGG- -5'
30494 5' -58.3 NC_006548.1 + 33529 0.71 0.192772
Target:  5'- aUCGCGCC---GGCCGGgaGCAucAGCCc -3'
miRNA:   3'- -AGUGCGGuccUCGGCCgaCGUu-UCGG- -5'
30494 5' -58.3 NC_006548.1 + 14661 0.71 0.192772
Target:  5'- gCGCGCCAGGcGCUGcucGCUGagcagAAGGCCa -3'
miRNA:   3'- aGUGCGGUCCuCGGC---CGACg----UUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 6567 0.71 0.197543
Target:  5'- gCACGCCGuGGAGCauguCGGCuccaccacgcucuUGCAuGGCCu -3'
miRNA:   3'- aGUGCGGU-CCUCG----GCCG-------------ACGUuUCGG- -5'
30494 5' -58.3 NC_006548.1 + 28612 0.71 0.209078
Target:  5'- uUCACGCCAucAGgCGGCgaaGaCAAAGCCg -3'
miRNA:   3'- -AGUGCGGUccUCgGCCGa--C-GUUUCGG- -5'
30494 5' -58.3 NC_006548.1 + 5572 0.71 0.209078
Target:  5'- gCAgGCCAGGccgGGCCGGCUugcGCAAcuGGUUg -3'
miRNA:   3'- aGUgCGGUCC---UCGGCCGA---CGUU--UCGG- -5'
30494 5' -58.3 NC_006548.1 + 14421 0.71 0.214772
Target:  5'- uUCugGCCguAGcGAuGCaCGGCUGCAcGGCUg -3'
miRNA:   3'- -AGugCGG--UC-CU-CG-GCCGACGUuUCGG- -5'
30494 5' -58.3 NC_006548.1 + 1461 0.71 0.214772
Target:  5'- aUCGCGCCGaggcGGAucGCCGGCaGUGGAGUg -3'
miRNA:   3'- -AGUGCGGU----CCU--CGGCCGaCGUUUCGg -5'
30494 5' -58.3 NC_006548.1 + 34076 0.7 0.226559
Target:  5'- aCugGCCGGccgacAGCCGGgUGCAGAucaaauGCCg -3'
miRNA:   3'- aGugCGGUCc----UCGGCCgACGUUU------CGG- -5'
30494 5' -58.3 NC_006548.1 + 2371 0.7 0.231426
Target:  5'- cCAgGCCGGcgguuuuccauccGAGCCGGCUGgAAcccuggcuucgccAGCCa -3'
miRNA:   3'- aGUgCGGUC-------------CUCGGCCGACgUU-------------UCGG- -5'
30494 5' -58.3 NC_006548.1 + 32643 0.7 0.232656
Target:  5'- gCACGUCGGGAGUCGaGCaacgGCGAucGCUg -3'
miRNA:   3'- aGUGCGGUCCUCGGC-CGa---CGUUu-CGG- -5'
30494 5' -58.3 NC_006548.1 + 6297 0.7 0.23889
Target:  5'- -uGCGCCuau-GCCGGCUGUGuacGGCCg -3'
miRNA:   3'- agUGCGGuccuCGGCCGACGUu--UCGG- -5'
30494 5' -58.3 NC_006548.1 + 14325 0.7 0.245264
Target:  5'- ---aGCCAGGccgaAGCCGGCgagcUGCccAGCCg -3'
miRNA:   3'- agugCGGUCC----UCGGCCG----ACGuuUCGG- -5'
30494 5' -58.3 NC_006548.1 + 3980 0.7 0.251777
Target:  5'- uUCGCGaaggaCCAGGAGCUGGUggaGCuGAAGaCCa -3'
miRNA:   3'- -AGUGC-----GGUCCUCGGCCGa--CG-UUUC-GG- -5'
30494 5' -58.3 NC_006548.1 + 6082 0.69 0.258433
Target:  5'- uUCGCGCCAGGGGUugCGGgUGaucAGCa -3'
miRNA:   3'- -AGUGCGGUCCUCG--GCCgACguuUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.