miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30495 5' -65.6 NC_006548.1 + 12845 0.66 0.202473
Target:  5'- aCAGCUCaGGUGCCgguaggaaGUCGCGacugccugcgaaCAGCCGc -3'
miRNA:   3'- aGUCGAGgCCGCGG--------CGGCGC------------GUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 7609 0.66 0.202473
Target:  5'- gCAGCUCUGcCGCgCGCUG-GuCGGCCGu -3'
miRNA:   3'- aGUCGAGGCcGCG-GCGGCgC-GUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 27000 0.66 0.202473
Target:  5'- gCAGCgUCGGCGaguCCGCCGaucaGCAGaCGg -3'
miRNA:   3'- aGUCGaGGCCGC---GGCGGCg---CGUCgGC- -5'
30495 5' -65.6 NC_006548.1 + 20335 0.66 0.201954
Target:  5'- aCGGCUCUGaccgagauccuGCGCCGCCuGCGUgacuucuucgucgAGCgCGa -3'
miRNA:   3'- aGUCGAGGC-----------CGCGGCGG-CGCG-------------UCG-GC- -5'
30495 5' -65.6 NC_006548.1 + 13628 0.66 0.197337
Target:  5'- gCAGCUUgc-CGCCGcCCGCGCAGgCa -3'
miRNA:   3'- aGUCGAGgccGCGGC-GGCGCGUCgGc -5'
30495 5' -65.6 NC_006548.1 + 32433 0.66 0.192316
Target:  5'- --nGUUCgCGGCGCUGCaggaGCGCaucuggacuguGGCCGu -3'
miRNA:   3'- aguCGAG-GCCGCGGCGg---CGCG-----------UCGGC- -5'
30495 5' -65.6 NC_006548.1 + 12585 0.66 0.192316
Target:  5'- cCAGCUggUCGGCGCCggauGCCGa--GGCCa -3'
miRNA:   3'- aGUCGA--GGCCGCGG----CGGCgcgUCGGc -5'
30495 5' -65.6 NC_006548.1 + 28540 0.66 0.187407
Target:  5'- cUCGGCgCCGGCcagGUCGCgGCGCuacCCGc -3'
miRNA:   3'- -AGUCGaGGCCG---CGGCGgCGCGuc-GGC- -5'
30495 5' -65.6 NC_006548.1 + 20882 0.66 0.181662
Target:  5'- aCGGCcaggucacaaagCCGGCgGCCgagguGCUGCGCAGCUu -3'
miRNA:   3'- aGUCGa-----------GGCCG-CGG-----CGGCGCGUCGGc -5'
30495 5' -65.6 NC_006548.1 + 17194 0.66 0.179782
Target:  5'- cUCGGC-CCGGCccguuggcugaccgaGuggaacuuccCCGgCGCGCAGCCGc -3'
miRNA:   3'- -AGUCGaGGCCG---------------C----------GGCgGCGCGUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 33031 0.66 0.177919
Target:  5'- cCGGCcggCCaGCGCCGCUGCaccggGCGcGCCa -3'
miRNA:   3'- aGUCGa--GGcCGCGGCGGCG-----CGU-CGGc -5'
30495 5' -65.6 NC_006548.1 + 7298 0.66 0.173337
Target:  5'- gCAGCgcaCGGCGCUauGCaaaGCAGCCGc -3'
miRNA:   3'- aGUCGag-GCCGCGG--CGgcgCGUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 21184 0.66 0.173337
Target:  5'- gCAGCUCggaCGGCcugGCCGCCcagGCuGCCGg -3'
miRNA:   3'- aGUCGAG---GCCG---CGGCGGcg-CGuCGGC- -5'
30495 5' -65.6 NC_006548.1 + 2318 0.66 0.173337
Target:  5'- gUCGGCUgCgCGGCGgCGCCGgaGCuGaCCGg -3'
miRNA:   3'- -AGUCGA-G-GCCGCgGCGGCg-CGuC-GGC- -5'
30495 5' -65.6 NC_006548.1 + 1914 0.67 0.170638
Target:  5'- aCGGC-CUGGUGCCcgauccccuggugcaGCCGCGCGcGCUu -3'
miRNA:   3'- aGUCGaGGCCGCGG---------------CGGCGCGU-CGGc -5'
30495 5' -65.6 NC_006548.1 + 9038 0.67 0.170638
Target:  5'- cCAGUUCCGGCGCUucauugGaCgGCGCuccagaagccccucuGGCCGu -3'
miRNA:   3'- aGUCGAGGCCGCGG------C-GgCGCG---------------UCGGC- -5'
30495 5' -65.6 NC_006548.1 + 21027 0.67 0.16886
Target:  5'- -aAGCUCaGGuCGCCGCCGUc--GCCGg -3'
miRNA:   3'- agUCGAGgCC-GCGGCGGCGcguCGGC- -5'
30495 5' -65.6 NC_006548.1 + 33370 0.67 0.16886
Target:  5'- -aGGCUgCGcaGCGCCGCaugcuccuCGCGGCCGg -3'
miRNA:   3'- agUCGAgGC--CGCGGCGgc------GCGUCGGC- -5'
30495 5' -65.6 NC_006548.1 + 17450 0.67 0.160217
Target:  5'- -aGGCgUCGGCGCCGUgGCcuCGGCCu -3'
miRNA:   3'- agUCGaGGCCGCGGCGgCGc-GUCGGc -5'
30495 5' -65.6 NC_006548.1 + 7125 0.67 0.160217
Target:  5'- gCGGCUCUGccccgaguccuuGCGCCGCuuaCGCGguGCgCGc -3'
miRNA:   3'- aGUCGAGGC------------CGCGGCG---GCGCguCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.