miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30506 3' -59.9 NC_006548.1 + 35880 0.66 0.39606
Target:  5'- gGCGCGauCCGCGC--GGCCGGC-GG-CGu -3'
miRNA:   3'- -CGCGC--GGCGCGuaCUGGUCGaCCuGC- -5'
30506 3' -59.9 NC_006548.1 + 29830 0.66 0.39606
Target:  5'- cCGCaacccaGCCGgGCAUGACCccgcuGCUccuGGACa -3'
miRNA:   3'- cGCG------CGGCgCGUACUGGu----CGA---CCUGc -5'
30506 3' -59.9 NC_006548.1 + 13644 0.66 0.39606
Target:  5'- gGCaCGCCugGCGaacCAUGAacagcucuccuaCCGGCUGGACGc -3'
miRNA:   3'- -CGcGCGG--CGC---GUACU------------GGUCGACCUGC- -5'
30506 3' -59.9 NC_006548.1 + 25463 0.66 0.387065
Target:  5'- uCGCGCCGagGCAcGccuCCGcGCUGGGCa -3'
miRNA:   3'- cGCGCGGCg-CGUaCu--GGU-CGACCUGc -5'
30506 3' -59.9 NC_006548.1 + 9356 0.66 0.387065
Target:  5'- gGgGUGCUGCgGCAUGuuGCCgAGC-GGACGc -3'
miRNA:   3'- -CgCGCGGCG-CGUAC--UGG-UCGaCCUGC- -5'
30506 3' -59.9 NC_006548.1 + 29961 0.66 0.360901
Target:  5'- cGCGUGCCgcacaGCGCcgGACCAGUcaUGcaGCGc -3'
miRNA:   3'- -CGCGCGG-----CGCGuaCUGGUCG--ACc-UGC- -5'
30506 3' -59.9 NC_006548.1 + 6457 0.66 0.360901
Target:  5'- cCGCGCCGCGCcUGGCgCGuGCacGAUGa -3'
miRNA:   3'- cGCGCGGCGCGuACUG-GU-CGacCUGC- -5'
30506 3' -59.9 NC_006548.1 + 7246 0.66 0.354976
Target:  5'- -aGCGCCGUGCGcugccccUGACCGGCgcucuguagcugccGGuCGa -3'
miRNA:   3'- cgCGCGGCGCGU-------ACUGGUCGa-------------CCuGC- -5'
30506 3' -59.9 NC_006548.1 + 33586 0.66 0.352458
Target:  5'- aGCGCGCUGgGCAccguUGuCCGGCcgaGcGACGu -3'
miRNA:   3'- -CGCGCGGCgCGU----ACuGGUCGa--C-CUGC- -5'
30506 3' -59.9 NC_006548.1 + 22903 0.66 0.352458
Target:  5'- gGCGauucaGUCGCGCGgcGGCgAGUUGGGCc -3'
miRNA:   3'- -CGCg----CGGCGCGUa-CUGgUCGACCUGc -5'
30506 3' -59.9 NC_006548.1 + 8590 0.67 0.344156
Target:  5'- cCGCGCUGCGCGuccugcgcguucUGAUCGcGCUgaaaGGACa -3'
miRNA:   3'- cGCGCGGCGCGU------------ACUGGU-CGA----CCUGc -5'
30506 3' -59.9 NC_006548.1 + 25926 0.67 0.335995
Target:  5'- -gGC-CCGCGCG-GGCCAGCaGG-CGg -3'
miRNA:   3'- cgCGcGGCGCGUaCUGGUCGaCCuGC- -5'
30506 3' -59.9 NC_006548.1 + 5773 0.67 0.335995
Target:  5'- cCGUGCCGCGUcgcggcauaaagGUGGgCAGUUGGGu- -3'
miRNA:   3'- cGCGCGGCGCG------------UACUgGUCGACCUgc -5'
30506 3' -59.9 NC_006548.1 + 34915 0.67 0.335995
Target:  5'- cGCGCGCaccggauaCGCAguaacccGGCCGGCUGGuCa -3'
miRNA:   3'- -CGCGCGgc------GCGUa------CUGGUCGACCuGc -5'
30506 3' -59.9 NC_006548.1 + 19315 0.67 0.335995
Target:  5'- uUGCGCCGCagGUA-GGCCGGCgacaaGGGCu -3'
miRNA:   3'- cGCGCGGCG--CGUaCUGGUCGa----CCUGc -5'
30506 3' -59.9 NC_006548.1 + 11747 0.67 0.320101
Target:  5'- uGCGCGgCGCGCGgcgGcGCCggGGUUGcGGCGa -3'
miRNA:   3'- -CGCGCgGCGCGUa--C-UGG--UCGAC-CUGC- -5'
30506 3' -59.9 NC_006548.1 + 3602 0.67 0.304776
Target:  5'- aGCGagaGCCGUGCcUGACgCaacuggugccgGGCUGGugGc -3'
miRNA:   3'- -CGCg--CGGCGCGuACUG-G-----------UCGACCugC- -5'
30506 3' -59.9 NC_006548.1 + 27076 0.67 0.304776
Target:  5'- uGCGgGCCGUcuGC-UGAUCGGC-GGACu -3'
miRNA:   3'- -CGCgCGGCG--CGuACUGGUCGaCCUGc -5'
30506 3' -59.9 NC_006548.1 + 33315 0.68 0.297328
Target:  5'- uGCgGCGCUGCGCA--GCCuGCUGuACGc -3'
miRNA:   3'- -CG-CGCGGCGCGUacUGGuCGACcUGC- -5'
30506 3' -59.9 NC_006548.1 + 3991 0.68 0.297328
Target:  5'- uGCGCGaugguuUCGCGaagGACCaggAGCUGGugGa -3'
miRNA:   3'- -CGCGC------GGCGCguaCUGG---UCGACCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.