miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30510 5' -55.4 NC_006548.1 + 1827 0.66 0.573184
Target:  5'- aGCUCuGCuCUGCAGCguccauCAGUugACg -3'
miRNA:   3'- aCGAGuUG-GACGUCGac----GUCGugUGg -5'
30510 5' -55.4 NC_006548.1 + 14346 0.66 0.573184
Target:  5'- cUGCcCAGCCgUGCAGCcgUGCAuCGCuacgGCCa -3'
miRNA:   3'- -ACGaGUUGG-ACGUCG--ACGUcGUG----UGG- -5'
30510 5' -55.4 NC_006548.1 + 970 0.66 0.573184
Target:  5'- -uCUCAACCUGCgccaGGCUGagcaguuGCugACUg -3'
miRNA:   3'- acGAGUUGGACG----UCGACgu-----CGugUGG- -5'
30510 5' -55.4 NC_006548.1 + 22617 0.66 0.572047
Target:  5'- cGCUCGccgaacuGCCggaaGCGGaaCUGCGGCAgAUCg -3'
miRNA:   3'- aCGAGU-------UGGa---CGUC--GACGUCGUgUGG- -5'
30510 5' -55.4 NC_006548.1 + 7749 0.66 0.572047
Target:  5'- cGCagAGCCUugcGCAGCUcGCGGCagcucauGCGCUc -3'
miRNA:   3'- aCGagUUGGA---CGUCGA-CGUCG-------UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 9309 0.66 0.561842
Target:  5'- aUGCUCAGCCggGCGauaUGUGGCAaauGCCc -3'
miRNA:   3'- -ACGAGUUGGa-CGUcg-ACGUCGUg--UGG- -5'
30510 5' -55.4 NC_006548.1 + 26310 0.66 0.561842
Target:  5'- cGCUUuuacuACCUGCAGCaG-AGCGCguucggcgGCCg -3'
miRNA:   3'- aCGAGu----UGGACGUCGaCgUCGUG--------UGG- -5'
30510 5' -55.4 NC_006548.1 + 21813 0.66 0.561842
Target:  5'- cGauaUCcGCCUGCGGCacCGGCGCGuCCa -3'
miRNA:   3'- aCg--AGuUGGACGUCGacGUCGUGU-GG- -5'
30510 5' -55.4 NC_006548.1 + 13432 0.66 0.561842
Target:  5'- aGCUCGGCgU-CAGaaccgGCGGCGgGCCa -3'
miRNA:   3'- aCGAGUUGgAcGUCga---CGUCGUgUGG- -5'
30510 5' -55.4 NC_006548.1 + 29363 0.66 0.550563
Target:  5'- cGCcgauggCAcCCUGUcGCUGCAGgAgGCCg -3'
miRNA:   3'- aCGa-----GUuGGACGuCGACGUCgUgUGG- -5'
30510 5' -55.4 NC_006548.1 + 24458 0.66 0.550563
Target:  5'- gGC-C-GCUUGCAGC-GCGGCAagacCGCCa -3'
miRNA:   3'- aCGaGuUGGACGUCGaCGUCGU----GUGG- -5'
30510 5' -55.4 NC_006548.1 + 20897 0.66 0.550563
Target:  5'- aGCcggCGGCCgaGguGCUGCGcagcuuGCugGCCg -3'
miRNA:   3'- aCGa--GUUGGa-CguCGACGU------CGugUGG- -5'
30510 5' -55.4 NC_006548.1 + 11668 0.66 0.550563
Target:  5'- aUGggCAuCCUGCucCUGCAGgACGCCc -3'
miRNA:   3'- -ACgaGUuGGACGucGACGUCgUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 29521 0.66 0.547193
Target:  5'- gGCUCAugagccccgcaguuGCCUucuggGcCAGCUGCuGCGCGgCa -3'
miRNA:   3'- aCGAGU--------------UGGA-----C-GUCGACGuCGUGUgG- -5'
30510 5' -55.4 NC_006548.1 + 9060 0.66 0.539355
Target:  5'- cGCUCGcCCUGUgcauccauugagGGCUGCguggAGCACGgUa -3'
miRNA:   3'- aCGAGUuGGACG------------UCGACG----UCGUGUgG- -5'
30510 5' -55.4 NC_006548.1 + 29661 0.66 0.539355
Target:  5'- cGCaaGACuggCUGCGGCUcccugaaugGCAGCcGCACCa -3'
miRNA:   3'- aCGagUUG---GACGUCGA---------CGUCG-UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 3435 0.66 0.539355
Target:  5'- cGCgUCAcCCUGUgcgAGgaGCAGCGCcgugGCCu -3'
miRNA:   3'- aCG-AGUuGGACG---UCgaCGUCGUG----UGG- -5'
30510 5' -55.4 NC_006548.1 + 7475 0.66 0.539355
Target:  5'- aGUUCGACCUGC--CUGCAGagcuugguCGCgACCa -3'
miRNA:   3'- aCGAGUUGGACGucGACGUC--------GUG-UGG- -5'
30510 5' -55.4 NC_006548.1 + 13315 0.66 0.539355
Target:  5'- uUGC-CcGCC-GCAGgaGC-GCGCGCCg -3'
miRNA:   3'- -ACGaGuUGGaCGUCgaCGuCGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 22602 0.66 0.528224
Target:  5'- gGCUCuccuccGCCgGCGGCUGU---GCGCCg -3'
miRNA:   3'- aCGAGu-----UGGaCGUCGACGucgUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.