miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30510 5' -55.4 NC_006548.1 + 35679 0.71 0.268644
Target:  5'- cGCUCGACCggacucUGgAcGCUGCGGCugAUCc -3'
miRNA:   3'- aCGAGUUGG------ACgU-CGACGUCGugUGG- -5'
30510 5' -55.4 NC_006548.1 + 12151 0.71 0.275879
Target:  5'- cGC-CGGCCaGCAGCaggagcauCAGCGCACCg -3'
miRNA:   3'- aCGaGUUGGaCGUCGac------GUCGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 33029 0.71 0.28327
Target:  5'- gGC-CGGCCaGCGccGCUGCaccgGGCGCGCCa -3'
miRNA:   3'- aCGaGUUGGaCGU--CGACG----UCGUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 7165 0.71 0.290816
Target:  5'- cGCUCAcgcACCUGUacauccuucAGCuUGCGGUACAgCg -3'
miRNA:   3'- aCGAGU---UGGACG---------UCG-ACGUCGUGUgG- -5'
30510 5' -55.4 NC_006548.1 + 2189 0.71 0.296192
Target:  5'- gUGCUCAggaaguccuugcgcGCCuucUGCAGCUGUcGCuccaGCACCu -3'
miRNA:   3'- -ACGAGU--------------UGG---ACGUCGACGuCG----UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 16482 0.7 0.306379
Target:  5'- cUGCggCAgagcACCUggagcaGCAGCUGCAGCGCgugggcugggACCg -3'
miRNA:   3'- -ACGa-GU----UGGA------CGUCGACGUCGUG----------UGG- -5'
30510 5' -55.4 NC_006548.1 + 23409 0.7 0.314396
Target:  5'- cGCUUGGCCagugGCAGaCUGUAGCcccgGCGCUg -3'
miRNA:   3'- aCGAGUUGGa---CGUC-GACGUCG----UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 19396 0.7 0.339394
Target:  5'- aGCUCGcuGCCgucCAGCUgGUAGCGCAgCa -3'
miRNA:   3'- aCGAGU--UGGac-GUCGA-CGUCGUGUgG- -5'
30510 5' -55.4 NC_006548.1 + 18787 0.7 0.339394
Target:  5'- aGCaCGGCCUGCGGCugggcgaggaucUGCGGCAggguCGCUa -3'
miRNA:   3'- aCGaGUUGGACGUCG------------ACGUCGU----GUGG- -5'
30510 5' -55.4 NC_006548.1 + 31499 0.7 0.339394
Target:  5'- -uCUCGACgUGCAGgUGCAGaUAgGCCg -3'
miRNA:   3'- acGAGUUGgACGUCgACGUC-GUgUGG- -5'
30510 5' -55.4 NC_006548.1 + 21186 0.69 0.356845
Target:  5'- aGCUCGgacgGCCUGgccgcccaGGCUGCcgguAGCACugCg -3'
miRNA:   3'- aCGAGU----UGGACg-------UCGACG----UCGUGugG- -5'
30510 5' -55.4 NC_006548.1 + 19304 0.69 0.356845
Target:  5'- cGCUCGacggccACCUGCGcaacCUGCuGCGCuACCa -3'
miRNA:   3'- aCGAGU------UGGACGUc---GACGuCGUG-UGG- -5'
30510 5' -55.4 NC_006548.1 + 26233 0.69 0.363099
Target:  5'- cGCUCAGCuCUcgccaggucuucaaGUGGCUGCAGgAgACCc -3'
miRNA:   3'- aCGAGUUG-GA--------------CGUCGACGUCgUgUGG- -5'
30510 5' -55.4 NC_006548.1 + 13108 0.69 0.38418
Target:  5'- cGUUCguugguGugCUGCAGCUGCagguugagcAGCGCAgCg -3'
miRNA:   3'- aCGAG------UugGACGUCGACG---------UCGUGUgG- -5'
30510 5' -55.4 NC_006548.1 + 17521 0.69 0.38418
Target:  5'- cGCuUCGGCC---AGCUGCGGCGCcaucGCCg -3'
miRNA:   3'- aCG-AGUUGGacgUCGACGUCGUG----UGG- -5'
30510 5' -55.4 NC_006548.1 + 11964 0.69 0.38418
Target:  5'- --aUCAGCgaGCGGC-GCAGCcagGCACCu -3'
miRNA:   3'- acgAGUUGgaCGUCGaCGUCG---UGUGG- -5'
30510 5' -55.4 NC_006548.1 + 16326 0.69 0.38418
Target:  5'- -aUUCGAuCCUGCAGCgccgugGCGGCAacgACCu -3'
miRNA:   3'- acGAGUU-GGACGUCGa-----CGUCGUg--UGG- -5'
30510 5' -55.4 NC_006548.1 + 11605 0.69 0.393596
Target:  5'- gGCgu--CCUGCAGgaGCAGgAUGCCc -3'
miRNA:   3'- aCGaguuGGACGUCgaCGUCgUGUGG- -5'
30510 5' -55.4 NC_006548.1 + 17032 0.68 0.402196
Target:  5'- aGCUCcGCCUGCAuGCcgGCgGGCAUgaugauuGCCg -3'
miRNA:   3'- aCGAGuUGGACGU-CGa-CG-UCGUG-------UGG- -5'
30510 5' -55.4 NC_006548.1 + 10598 0.68 0.412869
Target:  5'- aUGCUCGGCCUGUucuaaccaauccAGCUagGguGCGgACUu -3'
miRNA:   3'- -ACGAGUUGGACG------------UCGA--CguCGUgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.