miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30541 5' -52.1 NC_006548.1 + 36286 0.66 0.783576
Target:  5'- cGCgGCGGCAcugagcgauGCAGAucuGGCGcaGCUGCa -3'
miRNA:   3'- aUGgCGCUGU---------UGUUU---CCGCagUGACG- -5'
30541 5' -52.1 NC_006548.1 + 14974 0.66 0.783576
Target:  5'- aGCCGUGAUGACcugcAGGCG-CGcCUGUu -3'
miRNA:   3'- aUGGCGCUGUUGuu--UCCGCaGU-GACG- -5'
30541 5' -52.1 NC_006548.1 + 28667 0.66 0.783576
Target:  5'- cGCCGCcugauGGCGugAAGGGUGUCuugGUg -3'
miRNA:   3'- aUGGCG-----CUGUugUUUCCGCAGugaCG- -5'
30541 5' -52.1 NC_006548.1 + 34236 0.66 0.773021
Target:  5'- gUugCGUGACGGCAAcaGCGUgACaggUGCa -3'
miRNA:   3'- -AugGCGCUGUUGUUucCGCAgUG---ACG- -5'
30541 5' -52.1 NC_006548.1 + 23384 0.66 0.773021
Target:  5'- cACCGgGugGACcAGGGCcaUCGCUcGCu -3'
miRNA:   3'- aUGGCgCugUUGuUUCCGc-AGUGA-CG- -5'
30541 5' -52.1 NC_006548.1 + 29482 0.66 0.773021
Target:  5'- --gCGCGGCAACGucGGCcagcgaUCGCUGa -3'
miRNA:   3'- augGCGCUGUUGUuuCCGc-----AGUGACg -5'
30541 5' -52.1 NC_006548.1 + 20055 0.66 0.762304
Target:  5'- gGCCGaUGACGAgcGGGGCcUCGCUGa -3'
miRNA:   3'- aUGGC-GCUGUUguUUCCGcAGUGACg -5'
30541 5' -52.1 NC_006548.1 + 38284 0.66 0.762304
Target:  5'- gGCCGaUGGCGACAuAGuCGUC-CUGUg -3'
miRNA:   3'- aUGGC-GCUGUUGUuUCcGCAGuGACG- -5'
30541 5' -52.1 NC_006548.1 + 29624 0.66 0.740436
Target:  5'- gGCCGCGAaugggcucGCAGGugcuGGUGcCGCUGCc -3'
miRNA:   3'- aUGGCGCUgu------UGUUU----CCGCaGUGACG- -5'
30541 5' -52.1 NC_006548.1 + 1181 0.66 0.739328
Target:  5'- gGCCGCgcaGACGgccaggcucgcucGCGAauuGGGCGUCagcgaugcugaGCUGCg -3'
miRNA:   3'- aUGGCG---CUGU-------------UGUU---UCCGCAG-----------UGACG- -5'
30541 5' -52.1 NC_006548.1 + 37517 0.67 0.730429
Target:  5'- aGCCGUGGCGGCAuguacucccaaauuGGCGU-ACUGg -3'
miRNA:   3'- aUGGCGCUGUUGUuu------------CCGCAgUGACg -5'
30541 5' -52.1 NC_006548.1 + 21058 0.67 0.729312
Target:  5'- cGCuCGCG-CuGCAAuGGCGUgagCACUGCc -3'
miRNA:   3'- aUG-GCGCuGuUGUUuCCGCA---GUGACG- -5'
30541 5' -52.1 NC_006548.1 + 36635 0.67 0.729312
Target:  5'- gGCCGCGGCGuuGAucGCGUCGacGCg -3'
miRNA:   3'- aUGGCGCUGUugUUucCGCAGUgaCG- -5'
30541 5' -52.1 NC_006548.1 + 32940 0.67 0.729312
Target:  5'- gACCGCGuCGGCGAuucaacuGGCG-CGCccggUGCa -3'
miRNA:   3'- aUGGCGCuGUUGUUu------CCGCaGUG----ACG- -5'
30541 5' -52.1 NC_006548.1 + 29438 0.67 0.705615
Target:  5'- aUACCGCGgccuccuGCAGCGAcaGGGUGcCAUcgGCg -3'
miRNA:   3'- -AUGGCGC-------UGUUGUU--UCCGCaGUGa-CG- -5'
30541 5' -52.1 NC_006548.1 + 7940 0.67 0.695344
Target:  5'- cGCCGCcuGCAuCAuccGGCG-CGCUGCg -3'
miRNA:   3'- aUGGCGc-UGUuGUuu-CCGCaGUGACG- -5'
30541 5' -52.1 NC_006548.1 + 4491 0.67 0.683867
Target:  5'- gAUCGCGGCGAUGAAucuGGCGgugCAUgucgGCg -3'
miRNA:   3'- aUGGCGCUGUUGUUU---CCGCa--GUGa---CG- -5'
30541 5' -52.1 NC_006548.1 + 27237 0.68 0.660761
Target:  5'- cUGCCgagGCGGCAGCcAAGGCu--GCUGCu -3'
miRNA:   3'- -AUGG---CGCUGUUGuUUCCGcagUGACG- -5'
30541 5' -52.1 NC_006548.1 + 28600 0.68 0.659601
Target:  5'- cGCCGCGACcuggccggcgccgAGCAGGacuGCGUCAC-GCu -3'
miRNA:   3'- aUGGCGCUG-------------UUGUUUc--CGCAGUGaCG- -5'
30541 5' -52.1 NC_006548.1 + 35511 0.68 0.649156
Target:  5'- gGCCGUGGCAaggaucGCGGccugcuggaccAGGCGUCAUaucGCa -3'
miRNA:   3'- aUGGCGCUGU------UGUU-----------UCCGCAGUGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.