miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30545 3' -60 NC_006548.1 + 27989 0.66 0.39268
Target:  5'- gGCgGCaagcgAGAaCGCGCCGGGaacgcGCugGCCg -3'
miRNA:   3'- -CGgUG-----UCUaGCGCGGCUC-----CGugCGGa -5'
30545 3' -60 NC_006548.1 + 36003 0.66 0.39268
Target:  5'- aGCUcCAGGUgCG-GCuCGAucGGCGCGCCUa -3'
miRNA:   3'- -CGGuGUCUA-GCgCG-GCU--CCGUGCGGA- -5'
30545 3' -60 NC_006548.1 + 14082 0.66 0.39268
Target:  5'- cGCgGCGGAUCuccagcggugugGCGUCGGGGUAcuCGCUc -3'
miRNA:   3'- -CGgUGUCUAG------------CGCGGCUCCGU--GCGGa -5'
30545 3' -60 NC_006548.1 + 37847 0.66 0.383723
Target:  5'- aGCCGCAGAUUGCagauGCCaGGGUucggugAgGCCg -3'
miRNA:   3'- -CGGUGUCUAGCG----CGGcUCCG------UgCGGa -5'
30545 3' -60 NC_006548.1 + 13612 0.66 0.369678
Target:  5'- aGCCugGauUCGCGauucgcaagccaagaCC-AGGCACGCCUg -3'
miRNA:   3'- -CGGugUcuAGCGC---------------GGcUCCGUGCGGA- -5'
30545 3' -60 NC_006548.1 + 30229 0.66 0.35768
Target:  5'- aCCGCGaacccagaccuGGUCGCGgCuGGGCAgGCCUa -3'
miRNA:   3'- cGGUGU-----------CUAGCGCgGcUCCGUgCGGA- -5'
30545 3' -60 NC_006548.1 + 30761 0.66 0.349279
Target:  5'- uCCGC-GAUCcCGCCGGGcGCugGCUc -3'
miRNA:   3'- cGGUGuCUAGcGCGGCUC-CGugCGGa -5'
30545 3' -60 NC_006548.1 + 2537 0.67 0.324927
Target:  5'- gGCCG-AGAUCGCGCUGcGuCAUGCCc -3'
miRNA:   3'- -CGGUgUCUAGCGCGGCuCcGUGCGGa -5'
30545 3' -60 NC_006548.1 + 7320 0.67 0.324927
Target:  5'- aGCUACAGA--GCGCCGgucagGGGCAgCGCa- -3'
miRNA:   3'- -CGGUGUCUagCGCGGC-----UCCGU-GCGga -5'
30545 3' -60 NC_006548.1 + 8712 0.67 0.309406
Target:  5'- aCCuuGGA-CGCGCUGcGGGCGgGCCUg -3'
miRNA:   3'- cGGugUCUaGCGCGGC-UCCGUgCGGA- -5'
30545 3' -60 NC_006548.1 + 14503 0.67 0.309406
Target:  5'- cGUC-CAGGUCGuCGCCGccuGGGCACGg-- -3'
miRNA:   3'- -CGGuGUCUAGC-GCGGC---UCCGUGCgga -5'
30545 3' -60 NC_006548.1 + 16402 0.67 0.309406
Target:  5'- cCCGCAGGUCGuUGCCGccacGGCGCuGCa- -3'
miRNA:   3'- cGGUGUCUAGC-GCGGCu---CCGUG-CGga -5'
30545 3' -60 NC_006548.1 + 25141 0.67 0.309406
Target:  5'- cGCCccuGGAUCGgugGCCGGGGCGgGCUg -3'
miRNA:   3'- -CGGug-UCUAGCg--CGGCUCCGUgCGGa -5'
30545 3' -60 NC_006548.1 + 29390 0.67 0.304862
Target:  5'- gGCCGCGGuAUCGUuccugcaggcggucaGCCGAucGCugGCCg -3'
miRNA:   3'- -CGGUGUC-UAGCG---------------CGGCUc-CGugCGGa -5'
30545 3' -60 NC_006548.1 + 12520 0.67 0.30186
Target:  5'- gGCCuCGGcAUCcgGCGCCGAccaGCugGCCUg -3'
miRNA:   3'- -CGGuGUC-UAG--CGCGGCUc--CGugCGGA- -5'
30545 3' -60 NC_006548.1 + 4953 0.68 0.287196
Target:  5'- cGCCACuGGAgcggccgaaaUCGaGCCcgGAGGCACGCUUc -3'
miRNA:   3'- -CGGUG-UCU----------AGCgCGG--CUCCGUGCGGA- -5'
30545 3' -60 NC_006548.1 + 21202 0.68 0.287196
Target:  5'- gGCgGC-GAUgGCGCCGcuGGCACGUUUg -3'
miRNA:   3'- -CGgUGuCUAgCGCGGCu-CCGUGCGGA- -5'
30545 3' -60 NC_006548.1 + 33110 0.68 0.285045
Target:  5'- gGCCGgAGGUCaUGCCcucgacaacauaccGGGGCugGCCg -3'
miRNA:   3'- -CGGUgUCUAGcGCGG--------------CUCCGugCGGa -5'
30545 3' -60 NC_006548.1 + 22644 0.68 0.280077
Target:  5'- uGCgGCAGAUCgGUGCCGAucuggagauccaGG-ACGCCg -3'
miRNA:   3'- -CGgUGUCUAG-CGCGGCU------------CCgUGCGGa -5'
30545 3' -60 NC_006548.1 + 29350 0.69 0.253
Target:  5'- cGCUGCGcGGUCuCGCCGAuGGCAC-CCUg -3'
miRNA:   3'- -CGGUGU-CUAGcGCGGCU-CCGUGcGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.