miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30548 3' -55.2 NC_006548.1 + 29893 0.66 0.596459
Target:  5'- uGCAuGaCUGGuCCGgc-GCUGuGCGGCa -3'
miRNA:   3'- -CGUuC-GACC-GGCauuCGACuCGUCGc -5'
30548 3' -55.2 NC_006548.1 + 36964 0.66 0.596459
Target:  5'- -gAAGCUGGCaCGacauacacGCUGAGCaucuacAGCGg -3'
miRNA:   3'- cgUUCGACCG-GCauu-----CGACUCG------UCGC- -5'
30548 3' -55.2 NC_006548.1 + 6917 0.66 0.58507
Target:  5'- uGCAGGC-GGU----AGCUGuGCAGCGc -3'
miRNA:   3'- -CGUUCGaCCGgcauUCGACuCGUCGC- -5'
30548 3' -55.2 NC_006548.1 + 21183 0.66 0.573723
Target:  5'- gGCAgcucggacGGcCUGGCCGcccAGGCUGccGGUAGCa -3'
miRNA:   3'- -CGU--------UC-GACCGGCa--UUCGAC--UCGUCGc -5'
30548 3' -55.2 NC_006548.1 + 634 0.66 0.573723
Target:  5'- aCAGGC-GGCCGgccuggaacAGCUGccgaaaggauGGCGGCGg -3'
miRNA:   3'- cGUUCGaCCGGCau-------UCGAC----------UCGUCGC- -5'
30548 3' -55.2 NC_006548.1 + 6277 0.66 0.573723
Target:  5'- uCGAGUUGuGCCGgGAGCUu-GCGGUGa -3'
miRNA:   3'- cGUUCGAC-CGGCaUUCGAcuCGUCGC- -5'
30548 3' -55.2 NC_006548.1 + 23052 0.66 0.562428
Target:  5'- cCAGGCUGcucaguugcuGCCGUugggugcaaucGAGCggGAGCGGCc -3'
miRNA:   3'- cGUUCGAC----------CGGCA-----------UUCGa-CUCGUCGc -5'
30548 3' -55.2 NC_006548.1 + 336 0.66 0.562428
Target:  5'- -uGAGCUGGCuCGcAAGCgccugGAacugcauauacuGCAGCGg -3'
miRNA:   3'- cgUUCGACCG-GCaUUCGa----CU------------CGUCGC- -5'
30548 3' -55.2 NC_006548.1 + 29347 0.66 0.552315
Target:  5'- aGUGAGCUGGUCGgcGGCcagccggguauugucGAGCugcuGGCGg -3'
miRNA:   3'- -CGUUCGACCGGCauUCGa--------------CUCG----UCGC- -5'
30548 3' -55.2 NC_006548.1 + 20897 0.66 0.551194
Target:  5'- aGCcGGC-GGCCGagguGCUGcGCAGCu -3'
miRNA:   3'- -CGuUCGaCCGGCauu-CGACuCGUCGc -5'
30548 3' -55.2 NC_006548.1 + 5556 0.66 0.551194
Target:  5'- aGCAAGacccaGGCCGaccuGGCUcGAGCGGuCGa -3'
miRNA:   3'- -CGUUCga---CCGGCau--UCGA-CUCGUC-GC- -5'
30548 3' -55.2 NC_006548.1 + 22880 0.66 0.551194
Target:  5'- gGCcAGCgaaCCGUc-GCUGAGCAGCa -3'
miRNA:   3'- -CGuUCGaccGGCAuuCGACUCGUCGc -5'
30548 3' -55.2 NC_006548.1 + 14742 0.67 0.528943
Target:  5'- cGCAuccAGCuUGGCCuucuGCUcagcGAGCAGCGc -3'
miRNA:   3'- -CGU---UCG-ACCGGcauuCGA----CUCGUCGC- -5'
30548 3' -55.2 NC_006548.1 + 33437 0.67 0.51794
Target:  5'- uCGAGCUGGuuG--GGCUGGcGCGGUu -3'
miRNA:   3'- cGUUCGACCggCauUCGACU-CGUCGc -5'
30548 3' -55.2 NC_006548.1 + 1452 0.67 0.50703
Target:  5'- aGCAGuucCUGGCCGgcGGC-GGGCAGa- -3'
miRNA:   3'- -CGUUc--GACCGGCauUCGaCUCGUCgc -5'
30548 3' -55.2 NC_006548.1 + 16500 0.68 0.47492
Target:  5'- aGCAgcAGCUGcaGCgCGUGGGCUGGGaCcGCGu -3'
miRNA:   3'- -CGU--UCGAC--CG-GCAUUCGACUC-GuCGC- -5'
30548 3' -55.2 NC_006548.1 + 28597 0.68 0.47492
Target:  5'- cGCGAcCUGGCCGgc-GCcGAGCAGg- -3'
miRNA:   3'- -CGUUcGACCGGCauuCGaCUCGUCgc -5'
30548 3' -55.2 NC_006548.1 + 13821 0.68 0.473866
Target:  5'- gGCgAAGCucgacgguuUGGCCGUGaAGCUGGaaaacgcGCAGCu -3'
miRNA:   3'- -CG-UUCG---------ACCGGCAU-UCGACU-------CGUCGc -5'
30548 3' -55.2 NC_006548.1 + 476 0.68 0.443857
Target:  5'- aGCGAGCUGGCCG-AA-CUGAucGUcgaAGCGu -3'
miRNA:   3'- -CGUUCGACCGGCaUUcGACU--CG---UCGC- -5'
30548 3' -55.2 NC_006548.1 + 838 0.68 0.443857
Target:  5'- gGCGcAGCUGGCCGagaugAGGCUGcccuGgAGCu -3'
miRNA:   3'- -CGU-UCGACCGGCa----UUCGACu---CgUCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.