miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30573 5' -52.9 NC_006548.1 + 37692 0.67 0.661691
Target:  5'- aUCGACgUCGCUGCaucGAacacgcucaucacaGUGccggcGACCGGCGUc -3'
miRNA:   3'- -AGCUG-AGCGACG---CU--------------UAC-----UUGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 36841 0.76 0.236082
Target:  5'- uUC-AUUCGCaGCGAGUcGACCGGCGCg -3'
miRNA:   3'- -AGcUGAGCGaCGCUUAcUUGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 36814 0.69 0.58507
Target:  5'- -aGGCUCuCUGCGAGcgucgccGAGCUGGUGCg -3'
miRNA:   3'- agCUGAGcGACGCUUa------CUUGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 36785 1.12 0.000724
Target:  5'- gUCGACUCGCUGCGAAUGAACCAGCGCc -3'
miRNA:   3'- -AGCUGAGCGACGCUUACUUGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 36605 0.67 0.707009
Target:  5'- gCGguGCUCGC-GCGGG-GAugcgucgauacgguGCCAGCGCc -3'
miRNA:   3'- aGC--UGAGCGaCGCUUaCU--------------UGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 35855 0.71 0.47492
Target:  5'- cCGGCgUGCccgUGCGAAgaauGCCGGCGCg -3'
miRNA:   3'- aGCUGaGCG---ACGCUUacu-UGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 35260 0.67 0.676509
Target:  5'- cUCGACUgGCgGCGAugGUGGgcggccugguACCuGCGUu -3'
miRNA:   3'- -AGCUGAgCGaCGCU--UACU----------UGGuCGCG- -5'
30573 5' -52.9 NC_006548.1 + 33879 0.71 0.433758
Target:  5'- cUCGAUUCGCUGUu-GUGuagguCCAGCGg -3'
miRNA:   3'- -AGCUGAGCGACGcuUACuu---GGUCGCg -5'
30573 5' -52.9 NC_006548.1 + 33660 0.66 0.743472
Target:  5'- gCGACgUCGCU-CGGccGGAcaacggugcCCAGCGCg -3'
miRNA:   3'- aGCUG-AGCGAcGCUuaCUU---------GGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 33594 0.67 0.687857
Target:  5'- uUCaGCUCGCUGaCGucgagGAugCGGCGg -3'
miRNA:   3'- -AGcUGAGCGAC-GCuua--CUugGUCGCg -5'
30573 5' -52.9 NC_006548.1 + 32938 0.66 0.754281
Target:  5'- cUGAC-CGCgucgGCGAuucAACUGGCGCg -3'
miRNA:   3'- aGCUGaGCGa---CGCUuacUUGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 32662 0.68 0.607881
Target:  5'- aCGGCgaUCGCUGCGccUGucaccCCGGCGUu -3'
miRNA:   3'- aGCUG--AGCGACGCuuACuu---GGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 32469 0.66 0.743472
Target:  5'- cCGugUCGa--CGGAUGGACCGccgguaguggacGCGCg -3'
miRNA:   3'- aGCugAGCgacGCUUACUUGGU------------CGCG- -5'
30573 5' -52.9 NC_006548.1 + 31923 0.66 0.753206
Target:  5'- -gGACUCGaucaCGAcgGAACCgacaccuGGCGCg -3'
miRNA:   3'- agCUGAGCgac-GCUuaCUUGG-------UCGCG- -5'
30573 5' -52.9 NC_006548.1 + 31842 0.69 0.551194
Target:  5'- uUCaACUCGUUgGCGGAcGcaucuACCAGCGCa -3'
miRNA:   3'- -AGcUGAGCGA-CGCUUaCu----UGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 31492 0.66 0.732542
Target:  5'- aUUGGCUCGCUcaacaagcGCGGAgucGAAUaCAGCGg -3'
miRNA:   3'- -AGCUGAGCGA--------CGCUUa--CUUG-GUCGCg -5'
30573 5' -52.9 NC_006548.1 + 30859 0.7 0.495144
Target:  5'- -aGAUUCGUuggcugacccaccUGCGAcaGUGAaaccgaGCCAGCGCc -3'
miRNA:   3'- agCUGAGCG-------------ACGCU--UACU------UGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 30598 0.67 0.676509
Target:  5'- gCGGC-CGUUgGCGAA-GAACCAGUaggGCa -3'
miRNA:   3'- aGCUGaGCGA-CGCUUaCUUGGUCG---CG- -5'
30573 5' -52.9 NC_006548.1 + 29884 0.7 0.496219
Target:  5'- -gGGCUgCGCUGCauGAcUGGuCCGGCGCu -3'
miRNA:   3'- agCUGA-GCGACG--CUuACUuGGUCGCG- -5'
30573 5' -52.9 NC_006548.1 + 29657 0.66 0.743472
Target:  5'- -aGACUgGCUGCGGcucccUGAAUggCAGcCGCa -3'
miRNA:   3'- agCUGAgCGACGCUu----ACUUG--GUC-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.