Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30573 | 5' | -52.9 | NC_006548.1 | + | 36841 | 0.76 | 0.236082 |
Target: 5'- uUC-AUUCGCaGCGAGUcGACCGGCGCg -3' miRNA: 3'- -AGcUGAGCGaCGCUUAcUUGGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 30598 | 0.67 | 0.676509 |
Target: 5'- gCGGC-CGUUgGCGAA-GAACCAGUaggGCa -3' miRNA: 3'- aGCUGaGCGA-CGCUUaCUUGGUCG---CG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 31842 | 0.69 | 0.551194 |
Target: 5'- uUCaACUCGUUgGCGGAcGcaucuACCAGCGCa -3' miRNA: 3'- -AGcUGAGCGA-CGCUUaCu----UGGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 13156 | 0.7 | 0.496219 |
Target: 5'- gCGACcUGCUGCuuguacUGGACCAGgGCg -3' miRNA: 3'- aGCUGaGCGACGcuu---ACUUGGUCgCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 16752 | 0.7 | 0.489783 |
Target: 5'- aCGGCUCccccucgaacauguuGUUGgGggUGAGCaGGCGCa -3' miRNA: 3'- aGCUGAG---------------CGACgCuuACUUGgUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 33879 | 0.71 | 0.433758 |
Target: 5'- cUCGAUUCGCUGUu-GUGuagguCCAGCGg -3' miRNA: 3'- -AGCUGAGCGACGcuUACuu---GGUCGCg -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 17582 | 0.66 | 0.754281 |
Target: 5'- --uGCUUGcCUGCucGAUGAGCguGCGCa -3' miRNA: 3'- agcUGAGC-GACGc-UUACUUGguCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 33660 | 0.66 | 0.743472 |
Target: 5'- gCGACgUCGCU-CGGccGGAcaacggugcCCAGCGCg -3' miRNA: 3'- aGCUG-AGCGAcGCUuaCUU---------GGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 14086 | 0.67 | 0.687857 |
Target: 5'- --aGCUCGCgGCGGAUcu-CCAGCGg -3' miRNA: 3'- agcUGAGCGaCGCUUAcuuGGUCGCg -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 3686 | 0.69 | 0.58507 |
Target: 5'- aUGACgcugagCGCcgagGCG-GUGAACUGGCGCu -3' miRNA: 3'- aGCUGa-----GCGa---CGCuUACUUGGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 30859 | 0.7 | 0.495144 |
Target: 5'- -aGAUUCGUuggcugacccaccUGCGAcaGUGAaaccgaGCCAGCGCc -3' miRNA: 3'- agCUGAGCG-------------ACGCU--UACU------UGGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 13379 | 0.74 | 0.292138 |
Target: 5'- aUCGGCgcgCGCuccUGCGGcgGGcaaACCGGCGCc -3' miRNA: 3'- -AGCUGa--GCG---ACGCUuaCU---UGGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 17880 | 0.66 | 0.736928 |
Target: 5'- gUCGGCgcgauuugccccggCGCUGaCGAA-GGACCGGuCGUu -3' miRNA: 3'- -AGCUGa-------------GCGAC-GCUUaCUUGGUC-GCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 5148 | 0.73 | 0.358075 |
Target: 5'- aCGGCUuucuUGCggugGUGggUGAGuCCGGCGCc -3' miRNA: 3'- aGCUGA----GCGa---CGCuuACUU-GGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 36814 | 0.69 | 0.58507 |
Target: 5'- -aGGCUCuCUGCGAGcgucgccGAGCUGGUGCg -3' miRNA: 3'- agCUGAGcGACGCUUa------CUUGGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 29657 | 0.66 | 0.743472 |
Target: 5'- -aGACUgGCUGCGGcucccUGAAUggCAGcCGCa -3' miRNA: 3'- agCUGAgCGACGCUu----ACUUG--GUC-GCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 21815 | 0.66 | 0.754281 |
Target: 5'- gUCGAUaucCGcCUGCGGc---ACCGGCGCg -3' miRNA: 3'- -AGCUGa--GC-GACGCUuacuUGGUCGCG- -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 1165 | 0.72 | 0.423795 |
Target: 5'- -aGGCUCGCUcGCGAAUuGGGCguCAGCGa -3' miRNA: 3'- agCUGAGCGA-CGCUUA-CUUG--GUCGCg -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 33594 | 0.67 | 0.687857 |
Target: 5'- uUCaGCUCGCUGaCGucgagGAugCGGCGg -3' miRNA: 3'- -AGcUGAGCGAC-GCuua--CUugGUCGCg -5' |
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30573 | 5' | -52.9 | NC_006548.1 | + | 36605 | 0.67 | 0.707009 |
Target: 5'- gCGguGCUCGC-GCGGG-GAugcgucgauacgguGCCAGCGCc -3' miRNA: 3'- aGC--UGAGCGaCGCUUaCU--------------UGGUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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