miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30590 5' -59.7 NC_006549.1 + 76101 0.66 0.71889
Target:  5'- cGGuGUUUAGAGGAUCCagcACGGGCGc-- -3'
miRNA:   3'- aCC-CGGGUUUCCUGGG---UGCCCGCuuu -5'
30590 5' -59.7 NC_006549.1 + 7516 0.67 0.65872
Target:  5'- aGGGgCCAgagggagaccAAGGACCCAUagGGGCcAAGg -3'
miRNA:   3'- aCCCgGGU----------UUCCUGGGUG--CCCGcUUU- -5'
30590 5' -59.7 NC_006549.1 + 59010 0.67 0.65872
Target:  5'- gGGGCgaAGAGGGCUCcUGGGUGAu- -3'
miRNA:   3'- aCCCGggUUUCCUGGGuGCCCGCUuu -5'
30590 5' -59.7 NC_006549.1 + 102472 0.67 0.648568
Target:  5'- -uGGCCU--GGGACuCCugGGGCGc-- -3'
miRNA:   3'- acCCGGGuuUCCUG-GGugCCCGCuuu -5'
30590 5' -59.7 NC_006549.1 + 102595 0.67 0.638403
Target:  5'- gGGuGCCCgGGAGGACCUcuCGGGCc--- -3'
miRNA:   3'- aCC-CGGG-UUUCCUGGGu-GCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 49679 0.67 0.638403
Target:  5'- cUGGGaCCUugcGGACCCACGGuGCc--- -3'
miRNA:   3'- -ACCC-GGGuuuCCUGGGUGCC-CGcuuu -5'
30590 5' -59.7 NC_006549.1 + 50473 0.67 0.628234
Target:  5'- cGGGgCCAAcgaggccaauGGGACCCACuGGCc--- -3'
miRNA:   3'- aCCCgGGUU----------UCCUGGGUGcCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 50373 0.67 0.618067
Target:  5'- -uGGCCCgGGAGGACCCucUGGGCc--- -3'
miRNA:   3'- acCCGGG-UUUCCUGGGu-GCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 102389 0.67 0.618067
Target:  5'- -uGGCCCuuguGGACCCAUGGGg---- -3'
miRNA:   3'- acCCGGGuuu-CCUGGGUGCCCgcuuu -5'
30590 5' -59.7 NC_006549.1 + 50865 0.68 0.607911
Target:  5'- aGGuuGCCCAAcGGACCCAggUGGGCc--- -3'
miRNA:   3'- aCC--CGGGUUuCCUGGGU--GCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 45920 0.68 0.597772
Target:  5'- uUGGGCaaaAAAGGACCCACaGGauggcaGGGAa -3'
miRNA:   3'- -ACCCGgg-UUUCCUGGGUGcCCg-----CUUU- -5'
30590 5' -59.7 NC_006549.1 + 101914 0.68 0.567535
Target:  5'- gGGGCCCugcAGG-CCCugGGacaccGCGAGc -3'
miRNA:   3'- aCCCGGGuu-UCCuGGGugCC-----CGCUUu -5'
30590 5' -59.7 NC_006549.1 + 6922 0.69 0.547589
Target:  5'- aGGGCCCgAGAGGAgCUCGCGGaGagcaGGGAa -3'
miRNA:   3'- aCCCGGG-UUUCCU-GGGUGCC-Cg---CUUU- -5'
30590 5' -59.7 NC_006549.1 + 99587 0.69 0.52787
Target:  5'- -uGGCUC-GGGGACCU-CGGGCGAGGg -3'
miRNA:   3'- acCCGGGuUUCCUGGGuGCCCGCUUU- -5'
30590 5' -59.7 NC_006549.1 + 50510 0.69 0.52787
Target:  5'- gUGGGUCCAGGuGGACCagcCGGGCc--- -3'
miRNA:   3'- -ACCCGGGUUU-CCUGGgu-GCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 7387 0.69 0.518109
Target:  5'- aGGGCCCc-AGGGCCCGCccggcccuccaGGGCc--- -3'
miRNA:   3'- aCCCGGGuuUCCUGGGUG-----------CCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 51009 0.7 0.489281
Target:  5'- aGGGCCCc-GGGGCCCcuuaGGGcCGAu- -3'
miRNA:   3'- aCCCGGGuuUCCUGGGug--CCC-GCUuu -5'
30590 5' -59.7 NC_006549.1 + 6727 0.7 0.489281
Target:  5'- aGGGUCCAGAcggcacugcuGGugCUACGGGCu--- -3'
miRNA:   3'- aCCCGGGUUU----------CCugGGUGCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 6773 0.7 0.489281
Target:  5'- --aGCCCGguuaAGGGACCCGCGGGUc--- -3'
miRNA:   3'- accCGGGU----UUCCUGGGUGCCCGcuuu -5'
30590 5' -59.7 NC_006549.1 + 50801 0.7 0.479838
Target:  5'- uUGGGUCCuggcGGGCCCGCuGGGCc--- -3'
miRNA:   3'- -ACCCGGGuuu-CCUGGGUG-CCCGcuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.