miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30629 5' -52.7 NC_006549.1 + 46012 0.66 0.981385
Target:  5'- aCGCGGCcuuuagagaGUGgGCCAcgCUCAAcugccCGCa -3'
miRNA:   3'- -GCGCCG---------CAUgCGGUuaGGGUUuu---GCG- -5'
30629 5' -52.7 NC_006549.1 + 78027 0.66 0.981385
Target:  5'- uGCGGUagccGCGCC--UCCCGacggGAugGCa -3'
miRNA:   3'- gCGCCGca--UGCGGuuAGGGU----UUugCG- -5'
30629 5' -52.7 NC_006549.1 + 109385 0.66 0.980746
Target:  5'- aCGCGGgGUGCGUauaacCCCAcgugccuccuauaaAAGCGUu -3'
miRNA:   3'- -GCGCCgCAUGCGguua-GGGU--------------UUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 107437 0.66 0.97919
Target:  5'- uGCGaGCGUACGCUGgccGUCCguagAGGACGa -3'
miRNA:   3'- gCGC-CGCAUGCGGU---UAGGg---UUUUGCg -5'
30629 5' -52.7 NC_006549.1 + 126936 0.66 0.976808
Target:  5'- uGUGGCGUGaaauaCAcgCCCgAAGACGUg -3'
miRNA:   3'- gCGCCGCAUgcg--GUuaGGG-UUUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 41848 0.66 0.975287
Target:  5'- aGCGGgcccgcgaggaccccCGgggGCGCCGggCCCGAGAgggccCGCg -3'
miRNA:   3'- gCGCC---------------GCa--UGCGGUuaGGGUUUU-----GCG- -5'
30629 5' -52.7 NC_006549.1 + 122544 0.66 0.971455
Target:  5'- aGCGGCG-ACaGCCu-UCUCAGAuGCGUc -3'
miRNA:   3'- gCGCCGCaUG-CGGuuAGGGUUU-UGCG- -5'
30629 5' -52.7 NC_006549.1 + 10010 0.66 0.968468
Target:  5'- aCGCGGUGggaaGCC---CCCcuAGCGCg -3'
miRNA:   3'- -GCGCCGCaug-CGGuuaGGGuuUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 113723 0.66 0.968468
Target:  5'- uGCGGCuUAUGCC-GUCCCucucucuGCGg -3'
miRNA:   3'- gCGCCGcAUGCGGuUAGGGuuu----UGCg -5'
30629 5' -52.7 NC_006549.1 + 52309 0.67 0.965266
Target:  5'- gGCGGCGUGCGCauggCCCc------ -3'
miRNA:   3'- gCGCCGCAUGCGguuaGGGuuuugcg -5'
30629 5' -52.7 NC_006549.1 + 60975 0.67 0.961487
Target:  5'- gGCGGCcUGcCGCaCGAUCuCCAucuggucuauuucAAACGCg -3'
miRNA:   3'- gCGCCGcAU-GCG-GUUAG-GGU-------------UUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 68175 0.67 0.95819
Target:  5'- aGUGGUGUAaGau-AUCCCAcgGCGCg -3'
miRNA:   3'- gCGCCGCAUgCgguUAGGGUuuUGCG- -5'
30629 5' -52.7 NC_006549.1 + 14213 0.67 0.95705
Target:  5'- --aGGCGUACGCCA--CCCucuuguuuuuaaacGAAGCGg -3'
miRNA:   3'- gcgCCGCAUGCGGUuaGGG--------------UUUUGCg -5'
30629 5' -52.7 NC_006549.1 + 13700 0.67 0.954306
Target:  5'- uCGCGGCGUG-GCC--UUCCA--GCGUu -3'
miRNA:   3'- -GCGCCGCAUgCGGuuAGGGUuuUGCG- -5'
30629 5' -52.7 NC_006549.1 + 70553 0.68 0.94309
Target:  5'- aGCGGCGcucaucaucgaacagUACuCCAAcugCCCAgaAGACGCu -3'
miRNA:   3'- gCGCCGC---------------AUGcGGUUa--GGGU--UUUGCG- -5'
30629 5' -52.7 NC_006549.1 + 44678 0.68 0.941219
Target:  5'- aCGCGG-GUACGUacguuUCUCGAAACuGCa -3'
miRNA:   3'- -GCGCCgCAUGCGguu--AGGGUUUUG-CG- -5'
30629 5' -52.7 NC_006549.1 + 115021 0.68 0.941219
Target:  5'- uCGCGGCGUggaccgccuuuACGCCcccuucUCCUuugcACGCa -3'
miRNA:   3'- -GCGCCGCA-----------UGCGGuu----AGGGuuu-UGCG- -5'
30629 5' -52.7 NC_006549.1 + 129812 0.68 0.931269
Target:  5'- aGCGGUGgcCGUCAaggaacacAUCCCuAAGCGg -3'
miRNA:   3'- gCGCCGCauGCGGU--------UAGGGuUUUGCg -5'
30629 5' -52.7 NC_006549.1 + 107589 0.68 0.925922
Target:  5'- gGCGGCGUGUGgCAagGUCCCAuacccAACGa -3'
miRNA:   3'- gCGCCGCAUGCgGU--UAGGGUu----UUGCg -5'
30629 5' -52.7 NC_006549.1 + 59099 0.68 0.925373
Target:  5'- gGUGGCGUGgGgCGAagagggcUCCUggGugGCg -3'
miRNA:   3'- gCGCCGCAUgCgGUU-------AGGGuuUugCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.