Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 53301 | 0.7 | 0.53514 |
Target: 5'- aGGCGCgcggccaauuUCuuCAggcCGUCCAcguccgccaucugGCGCGCCa -3' miRNA: 3'- aCCGCG----------AGuuGUa--GCAGGU-------------UGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 46970 | 0.7 | 0.540418 |
Target: 5'- cGGCGCUUGGCAuagcaguuccaguauUCGccgccgacUCCAGCGCuCCg -3' miRNA: 3'- aCCGCGAGUUGU---------------AGC--------AGGUUGCGcGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 44178 | 0.7 | 0.546776 |
Target: 5'- cGGCGCgUCGgguAgGUCGUCCAuguCGC-CCa -3' miRNA: 3'- aCCGCG-AGU---UgUAGCAGGUu--GCGcGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 63144 | 0.7 | 0.557423 |
Target: 5'- aGGCGCUUgAGCGcgccggCGUCguGCGCgGCCu -3' miRNA: 3'- aCCGCGAG-UUGUa-----GCAGguUGCG-CGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 34195 | 0.7 | 0.557423 |
Target: 5'- ---gGCUCGGCGUCaGUUCAAUGgGCCu -3' miRNA: 3'- accgCGAGUUGUAG-CAGGUUGCgCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 33520 | 0.7 | 0.557423 |
Target: 5'- cGGUGC-CuuCGUCGgCCGagaucugcagGCGCGCCa -3' miRNA: 3'- aCCGCGaGuuGUAGCaGGU----------UGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 33070 | 0.69 | 0.578884 |
Target: 5'- aUGGCGUaCAGCGgcUUG-CCGgugcauGCGCGCCa -3' miRNA: 3'- -ACCGCGaGUUGU--AGCaGGU------UGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 38654 | 0.69 | 0.589684 |
Target: 5'- gGGUGUcCAGCGUCaGgcgcucggCCuGCGCGCCa -3' miRNA: 3'- aCCGCGaGUUGUAG-Ca-------GGuUGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 56778 | 0.69 | 0.600518 |
Target: 5'- cGGgGCUCAgGCcgCG-CCAgGCGCGCa -3' miRNA: 3'- aCCgCGAGU-UGuaGCaGGU-UGCGCGg -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 4636 | 0.69 | 0.600518 |
Target: 5'- cGGCGaCUCGccGCAggcaUGUCCcucgagGACGCGCUg -3' miRNA: 3'- aCCGC-GAGU--UGUa---GCAGG------UUGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 57022 | 0.69 | 0.611379 |
Target: 5'- -uGCGCaUCGGCcgCGUCCAucaccugguCGCGCa -3' miRNA: 3'- acCGCG-AGUUGuaGCAGGUu--------GCGCGg -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 54408 | 0.69 | 0.611379 |
Target: 5'- uUGGCGC-CGACGgcauugCGUCCGGCGaacgaGUa -3' miRNA: 3'- -ACCGCGaGUUGUa-----GCAGGUUGCg----CGg -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 11076 | 0.69 | 0.611379 |
Target: 5'- aGGCuCUgGcGCAUCGUCUGA-GCGCCg -3' miRNA: 3'- aCCGcGAgU-UGUAGCAGGUUgCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 56684 | 0.69 | 0.622257 |
Target: 5'- gGcGCGCUCAGCcagCGaaUCGACGCGCa -3' miRNA: 3'- aC-CGCGAGUUGua-GCa-GGUUGCGCGg -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 47143 | 0.69 | 0.633144 |
Target: 5'- aGGCGUUCGggccaGCAgguUC-UCCAcuGCGCGCUg -3' miRNA: 3'- aCCGCGAGU-----UGU---AGcAGGU--UGCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 29912 | 0.69 | 0.633144 |
Target: 5'- cGGgGCUCAugccgcGCAgggCGUCCGACauggaUGCCg -3' miRNA: 3'- aCCgCGAGU------UGUa--GCAGGUUGc----GCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 8308 | 0.68 | 0.654905 |
Target: 5'- gGGUuccGCUCAACGUCGg-CGAggagugguacCGCGCCc -3' miRNA: 3'- aCCG---CGAGUUGUAGCagGUU----------GCGCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 59553 | 0.68 | 0.66576 |
Target: 5'- cGGCuGUUCGACAUCG--CAACGCcCCc -3' miRNA: 3'- aCCG-CGAGUUGUAGCagGUUGCGcGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 34526 | 0.68 | 0.66576 |
Target: 5'- aGGCGgUguaGAUGUCGUCgAGCGaUGCCg -3' miRNA: 3'- aCCGCgAg--UUGUAGCAGgUUGC-GCGG- -5' |
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30683 | 5' | -54.9 | NC_006552.1 | + | 29094 | 0.68 | 0.66576 |
Target: 5'- cGGCG-UCAcCcgCGcCCugcuGCGCGCCa -3' miRNA: 3'- aCCGCgAGUuGuaGCaGGu---UGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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