Results 41 - 60 of 80 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 34526 | 0.68 | 0.66576 |
Target: 5'- aGGCGgUguaGAUGUCGUCgAGCGaUGCCg -3' miRNA: 3'- aCCGCgAg--UUGUAGCAGgUUGC-GCGG- -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 34195 | 0.7 | 0.557423 |
Target: 5'- ---gGCUCGGCGUCaGUUCAAUGgGCCu -3' miRNA: 3'- accgCGAGUUGUAG-CAGGUUGCgCGG- -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 33520 | 0.7 | 0.557423 |
Target: 5'- cGGUGC-CuuCGUCGgCCGagaucugcagGCGCGCCa -3' miRNA: 3'- aCCGCGaGuuGUAGCaGGU----------UGCGCGG- -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 33330 | 0.66 | 0.786646 |
Target: 5'- gGGCGCUCGccgaaguaaGCcgugaaagcggcuUCGgCCAGCGCGgCg -3' miRNA: 3'- aCCGCGAGU---------UGu------------AGCaGGUUGCGCgG- -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 33212 | 0.72 | 0.425811 |
Target: 5'- gUGGUGCUCGGCGugaaUC-UCCGGCuGCGCg -3' miRNA: 3'- -ACCGCGAGUUGU----AGcAGGUUG-CGCGg -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 33070 | 0.69 | 0.578884 |
Target: 5'- aUGGCGUaCAGCGgcUUG-CCGgugcauGCGCGCCa -3' miRNA: 3'- -ACCGCGaGUUGU--AGCaGGU------UGCGCGG- -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 32472 | 0.67 | 0.713013 |
Target: 5'- gGaGCGCUCGAacagGUCGcgaugguugaggaaUCGACGCGCCa -3' miRNA: 3'- aC-CGCGAGUUg---UAGCa-------------GGUUGCGCGG- -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 31794 | 0.7 | 0.525685 |
Target: 5'- cGGCGCUUAGacugCG-CCGAgGCGCUc -3' miRNA: 3'- aCCGCGAGUUgua-GCaGGUUgCGCGG- -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 31652 | 0.66 | 0.760783 |
Target: 5'- aGGCGCgCAGCGg---CCGACagcagcaggccaGCGCCg -3' miRNA: 3'- aCCGCGaGUUGUagcaGGUUG------------CGCGG- -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 31609 | 0.67 | 0.719361 |
Target: 5'- cGGCGUccugcggauaggUC-GCGUCGUCC-ACGcCGUCg -3' miRNA: 3'- aCCGCG------------AGuUGUAGCAGGuUGC-GCGG- -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 30967 | 0.73 | 0.38912 |
Target: 5'- cGGCGCUCGAC-UCGgcuUCCGaguuguACGCGgCg -3' miRNA: 3'- aCCGCGAGUUGuAGC---AGGU------UGCGCgG- -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 30836 | 0.7 | 0.525685 |
Target: 5'- gGGUGCU--GCuuggCGUUCGACGCGCg -3' miRNA: 3'- aCCGCGAguUGua--GCAGGUUGCGCGg -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 29912 | 0.69 | 0.633144 |
Target: 5'- cGGgGCUCAugccgcGCAgggCGUCCGACauggaUGCCg -3' miRNA: 3'- aCCgCGAGU------UGUa--GCAGGUUGc----GCGG- -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 29094 | 0.68 | 0.66576 |
Target: 5'- cGGCG-UCAcCcgCGcCCugcuGCGCGCCa -3' miRNA: 3'- aCCGCgAGUuGuaGCaGGu---UGCGCGG- -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 29028 | 0.73 | 0.38912 |
Target: 5'- cGGCGCUggccucgcCAGCAUCG-CCGGCacccGCGUCg -3' miRNA: 3'- aCCGCGA--------GUUGUAGCaGGUUG----CGCGG- -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 26613 | 0.66 | 0.760783 |
Target: 5'- -cGCGCUUcACAUCGa--AGCGCGCa -3' miRNA: 3'- acCGCGAGuUGUAGCaggUUGCGCGg -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 25716 | 0.67 | 0.719361 |
Target: 5'- cUGGCGUUCuGCcgUGUUCAGCcgguaguucagaGCGUCg -3' miRNA: 3'- -ACCGCGAGuUGuaGCAGGUUG------------CGCGG- -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 24643 | 0.67 | 0.740286 |
Target: 5'- cGGCGC-CGGagaaGUCCG-CGCGCUu -3' miRNA: 3'- aCCGCGaGUUguagCAGGUuGCGCGG- -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 23998 | 0.72 | 0.435301 |
Target: 5'- -cGCGaUCAGCGUCGUaaagccgagCUGACGCGCCu -3' miRNA: 3'- acCGCgAGUUGUAGCA---------GGUUGCGCGG- -5' |
|||||||
30683 | 5' | -54.9 | NC_006552.1 | + | 23805 | 0.72 | 0.454641 |
Target: 5'- aGGCGCcacUCAGgGUCaG-CCAggcaGCGCGCCa -3' miRNA: 3'- aCCGCG---AGUUgUAG-CaGGU----UGCGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home