miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30684 5' -62.1 NC_006552.1 + 11206 0.66 0.428567
Target:  5'- ---gGCAgGCcaggCGCGUgGCCCUGGCc- -3'
miRNA:   3'- guugCGU-CGa---GCGCGgCGGGACCGcg -5'
30684 5' -62.1 NC_006552.1 + 20739 0.66 0.410632
Target:  5'- ---aGCAGCaacUGCGCUGCC--GGCGCc -3'
miRNA:   3'- guugCGUCGa--GCGCGGCGGgaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 31803 0.66 0.401841
Target:  5'- gUAGgGCGGCg-GCGCuuagacugCGCCgaGGCGCu -3'
miRNA:   3'- -GUUgCGUCGagCGCG--------GCGGgaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 56779 0.66 0.401841
Target:  5'- --uCGgGGCUCaG-GCCGCgCCaGGCGCg -3'
miRNA:   3'- guuGCgUCGAG-CgCGGCG-GGaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 15345 0.66 0.401841
Target:  5'- -uGCGCcaccGGCUCGaCGCCGCgUcGGaCGCc -3'
miRNA:   3'- guUGCG----UCGAGC-GCGGCGgGaCC-GCG- -5'
30684 5' -62.1 NC_006552.1 + 54736 0.66 0.401841
Target:  5'- aCGGCGCaggcgagccAGCgcaGUGCCGCCUucUGGCa- -3'
miRNA:   3'- -GUUGCG---------UCGag-CGCGGCGGG--ACCGcg -5'
30684 5' -62.1 NC_006552.1 + 26829 0.66 0.393171
Target:  5'- cCAGCaGCAGUUCGCccaccaggGuCCGgCC-GGCGCg -3'
miRNA:   3'- -GUUG-CGUCGAGCG--------C-GGCgGGaCCGCG- -5'
30684 5' -62.1 NC_006552.1 + 56965 0.66 0.393171
Target:  5'- aAGCGCAGCaugUCgGCGCgGgCCaUGGUGUc -3'
miRNA:   3'- gUUGCGUCG---AG-CGCGgCgGG-ACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 14873 0.66 0.393171
Target:  5'- -uGCGuCGGCaaucggCGUGCUgGCCCUGGUGg -3'
miRNA:   3'- guUGC-GUCGa-----GCGCGG-CGGGACCGCg -5'
30684 5' -62.1 NC_006552.1 + 38882 0.66 0.391451
Target:  5'- cCAACaGCAGCUCGCcaccauUCGCUCgcgucagguagaGGCGCg -3'
miRNA:   3'- -GUUG-CGUCGAGCGc-----GGCGGGa-----------CCGCG- -5'
30684 5' -62.1 NC_006552.1 + 51514 0.66 0.384623
Target:  5'- -uACG-GGCguccaGUGCCG-CCUGGCGCa -3'
miRNA:   3'- guUGCgUCGag---CGCGGCgGGACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 49707 0.66 0.376199
Target:  5'- --gUGCGGCUUGCGCCuGCU---GCGCg -3'
miRNA:   3'- guuGCGUCGAGCGCGG-CGGgacCGCG- -5'
30684 5' -62.1 NC_006552.1 + 49640 0.67 0.3679
Target:  5'- uGGCGUcggGGCUugcugcUGCGCCGCCUgguccagGGCGa -3'
miRNA:   3'- gUUGCG---UCGA------GCGCGGCGGGa------CCGCg -5'
30684 5' -62.1 NC_006552.1 + 62476 0.67 0.3679
Target:  5'- uCAGCGCAGCUUG-G-CGCCaucGCGCg -3'
miRNA:   3'- -GUUGCGUCGAGCgCgGCGGgacCGCG- -5'
30684 5' -62.1 NC_006552.1 + 38732 0.67 0.359728
Target:  5'- -cGCGCAGCcaCGCcacaGCCGCgCCguaGGUGCc -3'
miRNA:   3'- guUGCGUCGa-GCG----CGGCG-GGa--CCGCG- -5'
30684 5' -62.1 NC_006552.1 + 57045 0.67 0.359728
Target:  5'- -cGCGCAGUaUCGCgGCC-CCCUccuGCGCa -3'
miRNA:   3'- guUGCGUCG-AGCG-CGGcGGGAc--CGCG- -5'
30684 5' -62.1 NC_006552.1 + 43419 0.67 0.351684
Target:  5'- uCGACGUuugcgguccaAGcCUgGcCGCCGUCCUGGuCGCc -3'
miRNA:   3'- -GUUGCG----------UC-GAgC-GCGGCGGGACC-GCG- -5'
30684 5' -62.1 NC_006552.1 + 42969 0.67 0.346919
Target:  5'- uGACGCGauccGCUgcCGUgGCCGuaucgaccaccagcaCCCUGGCGCg -3'
miRNA:   3'- gUUGCGU----CGA--GCG-CGGC---------------GGGACCGCG- -5'
30684 5' -62.1 NC_006552.1 + 52365 0.67 0.343768
Target:  5'- uGGCGaCAGCcuucugcUGCGCUGCCC-GGCGg -3'
miRNA:   3'- gUUGC-GUCGa------GCGCGGCGGGaCCGCg -5'
30684 5' -62.1 NC_006552.1 + 31613 0.67 0.341418
Target:  5'- -uACGCGGCguccugcggauaggUCGCGUCGUCCacgccgucGGCGUa -3'
miRNA:   3'- guUGCGUCG--------------AGCGCGGCGGGa-------CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.