miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30686 3' -52.7 NC_006552.1 + 46404 0.67 0.827334
Target:  5'- -gAACGUGCCUGGGcgUUGGCGGUa- -3'
miRNA:   3'- ugUUGCGUGGGUCCuuGACCGUUAcg -5'
30686 3' -52.7 NC_006552.1 + 52251 0.71 0.593383
Target:  5'- cCAGCGCgcugGCCUuGGc-CUGGCGGUGCg -3'
miRNA:   3'- uGUUGCG----UGGGuCCuuGACCGUUACG- -5'
30686 3' -52.7 NC_006552.1 + 53069 0.67 0.818011
Target:  5'- ---cCGCACgguguCCAGGAACUuGGCcuUGCc -3'
miRNA:   3'- uguuGCGUG-----GGUCCUUGA-CCGuuACG- -5'
30686 3' -52.7 NC_006552.1 + 53259 0.66 0.86324
Target:  5'- -uGGCGCGCCaggcucgcuaggucGGAGCgcaUGGCGGUGUg -3'
miRNA:   3'- ugUUGCGUGGgu------------CCUUG---ACCGUUACG- -5'
30686 3' -52.7 NC_006552.1 + 56581 0.7 0.638044
Target:  5'- uCAGCGCcCaCCGGGGACUuuGCAAUGUc -3'
miRNA:   3'- uGUUGCGuG-GGUCCUUGAc-CGUUACG- -5'
30686 3' -52.7 NC_006552.1 + 57739 0.66 0.853993
Target:  5'- cGCGACGgACCCgccgAGGuACUGcGCAAacaGCa -3'
miRNA:   3'- -UGUUGCgUGGG----UCCuUGAC-CGUUa--CG- -5'
30686 3' -52.7 NC_006552.1 + 59539 0.71 0.604521
Target:  5'- cGCAACGC-CCCcGGA--UGGCcucGAUGCg -3'
miRNA:   3'- -UGUUGCGuGGGuCCUugACCG---UUACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.