Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30686 | 3' | -52.7 | NC_006552.1 | + | 46404 | 0.67 | 0.827334 |
Target: 5'- -gAACGUGCCUGGGcgUUGGCGGUa- -3' miRNA: 3'- ugUUGCGUGGGUCCuuGACCGUUAcg -5' |
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30686 | 3' | -52.7 | NC_006552.1 | + | 52251 | 0.71 | 0.593383 |
Target: 5'- cCAGCGCgcugGCCUuGGc-CUGGCGGUGCg -3' miRNA: 3'- uGUUGCG----UGGGuCCuuGACCGUUACG- -5' |
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30686 | 3' | -52.7 | NC_006552.1 | + | 53069 | 0.67 | 0.818011 |
Target: 5'- ---cCGCACgguguCCAGGAACUuGGCcuUGCc -3' miRNA: 3'- uguuGCGUG-----GGUCCUUGA-CCGuuACG- -5' |
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30686 | 3' | -52.7 | NC_006552.1 | + | 53259 | 0.66 | 0.86324 |
Target: 5'- -uGGCGCGCCaggcucgcuaggucGGAGCgcaUGGCGGUGUg -3' miRNA: 3'- ugUUGCGUGGgu------------CCUUG---ACCGUUACG- -5' |
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30686 | 3' | -52.7 | NC_006552.1 | + | 56581 | 0.7 | 0.638044 |
Target: 5'- uCAGCGCcCaCCGGGGACUuuGCAAUGUc -3' miRNA: 3'- uGUUGCGuG-GGUCCUUGAc-CGUUACG- -5' |
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30686 | 3' | -52.7 | NC_006552.1 | + | 57739 | 0.66 | 0.853993 |
Target: 5'- cGCGACGgACCCgccgAGGuACUGcGCAAacaGCa -3' miRNA: 3'- -UGUUGCgUGGG----UCCuUGAC-CGUUa--CG- -5' |
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30686 | 3' | -52.7 | NC_006552.1 | + | 59539 | 0.71 | 0.604521 |
Target: 5'- cGCAACGC-CCCcGGA--UGGCcucGAUGCg -3' miRNA: 3'- -UGUUGCGuGGGuCCUugACCG---UUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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