miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
30688	5'	-59.2	NC_006552.1	+	28992	0.66	0.535187
	Target:  5'- cGGCUGCGACGuUGGGCUCgUCGCuGUc -3' miRNA:   3'- -CCGGCGUUGCcACUUGGG-AGCGcCGu -5'
30688	5'	-59.2	NC_006552.1	+	35983	0.66	0.535187
	Target:  5'- uGGCUGauGCGGUGGACauccuggaUCGCGGUc -3' miRNA:   3'- -CCGGCguUGCCACUUGgg------AGCGCCGu -5'
30688	5'	-59.2	NC_006552.1	+	5129	0.66	0.555769
	Target:  5'- aGGCCuGCGGCGGUcGGGCCaCUCuccaGCaGCu -3' miRNA:   3'- -CCGG-CGUUGCCA-CUUGG-GAG----CGcCGu -5'
30688	5'	-59.2	NC_006552.1	+	2818	0.66	0.57553
	Target:  5'- uGGaCCGCAACuGUucgacugGAACCC-CGCGGa- -3' miRNA:   3'- -CC-GGCGUUGcCA-------CUUGGGaGCGCCgu -5'
30688	5'	-59.2	NC_006552.1	+	43386	0.66	0.585995
	Target:  5'- uGGUCGCcccccACGGUGAuguCCUCGaucaccaCGGCAu -3' miRNA:   3'- -CCGGCGu----UGCCACUug-GGAGC-------GCCGU- -5'
30688	5'	-59.2	NC_006552.1	+	49995	0.66	0.587044
	Target:  5'- cGGCCuuGAUGGUGccgguCgCCUUGCGGUu -3' miRNA:   3'- -CCGGcgUUGCCACuu---G-GGAGCGCCGu -5'
30688	5'	-59.2	NC_006552.1	+	43330	0.66	0.587044
	Target:  5'- cGCCGCcaGAUGGUccAGCaCCagCGCGGCAa -3' miRNA:   3'- cCGGCG--UUGCCAc-UUG-GGa-GCGCCGU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home