miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
30688	5'	-59.2	NC_006552.1	+	45636	0.68	0.427996
	Target:  5'- cGGCCGCuagcugAGCGGUGuacugccccagGGCCUUCGCcGCc -3' miRNA:   3'- -CCGGCG------UUGCCAC-----------UUGGGAGCGcCGu -5'
30688	5'	-59.2	NC_006552.1	+	45778	0.74	0.184909
	Target:  5'- aGGCCGCAuCGGgacGAACCCUacggGgGGCGu -3' miRNA:   3'- -CCGGCGUuGCCa--CUUGGGAg---CgCCGU- -5'
30688	5'	-59.2	NC_006552.1	+	49995	0.66	0.587044
	Target:  5'- cGGCCuuGAUGGUGccgguCgCCUUGCGGUu -3' miRNA:   3'- -CCGGcgUUGCCACuu---G-GGAGCGCCGu -5'
30688	5'	-59.2	NC_006552.1	+	53071	0.68	0.459847
	Target:  5'- uGCCGC-ACGGUGuccaGgaacuuggccuugccGCCCUCGaUGGCAu -3' miRNA:   3'- cCGGCGuUGCCAC----U---------------UGGGAGC-GCCGU- -5'
30688	5'	-59.2	NC_006552.1	+	53448	0.77	0.116977
	Target:  5'- aGGCCGgAGCGGcGAauggcacgcucggcAUCCUCGCGGCu -3' miRNA:   3'- -CCGGCgUUGCCaCU--------------UGGGAGCGCCGu -5'
30688	5'	-59.2	NC_006552.1	+	56050	0.68	0.446577
	Target:  5'- uGCCGCcgucacccuGCGcGU-AGCCgCUCGCGGCAu -3' miRNA:   3'- cCGGCGu--------UGC-CAcUUGG-GAGCGCCGU- -5'
30688	5'	-59.2	NC_006552.1	+	57177	0.7	0.326841
	Target:  5'- aGCgCGaCAGCGGUGcauAGCCCUCGCccuGCAa -3' miRNA:   3'- cCG-GC-GUUGCCAC---UUGGGAGCGc--CGU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home