miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30703 5' -55.8 NC_006552.1 + 50933 0.66 0.75997
Target:  5'- uGGCGCCGUaaccucgcaccaCGUUGCcgggggugaaguauUCGGCGCggGCCu -3'
miRNA:   3'- uCUGUGGCG------------GCAACGu-------------AGCCGUG--UGG- -5'
30703 5' -55.8 NC_006552.1 + 27363 0.66 0.755931
Target:  5'- uGGGCGCCgGCC--UGCAUggcacugaaugCGGCcuGCACCc -3'
miRNA:   3'- -UCUGUGG-CGGcaACGUA-----------GCCG--UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 26309 0.66 0.745749
Target:  5'- cAGGCAgUGCgGUcccagccaGUAggagCGGCGCACCg -3'
miRNA:   3'- -UCUGUgGCGgCAa-------CGUa---GCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 3846 0.66 0.742672
Target:  5'- aGGACAgCCGCagcaaCGUcgggagccgggccaUGUuUUGGCGCGCCg -3'
miRNA:   3'- -UCUGU-GGCG-----GCA--------------ACGuAGCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 51385 0.66 0.735456
Target:  5'- cGACaacauaGCCGCUGUaggUGC--CGGCGCGCa -3'
miRNA:   3'- uCUG------UGGCGGCA---ACGuaGCCGUGUGg -5'
30703 5' -55.8 NC_006552.1 + 30104 0.66 0.735456
Target:  5'- cGGCGUCGCUGgUGCcgcUCGGCAUcuuGCCg -3'
miRNA:   3'- uCUGUGGCGGCaACGu--AGCCGUG---UGG- -5'
30703 5' -55.8 NC_006552.1 + 29012 0.66 0.725062
Target:  5'- -aGCAUCGCCGgcacccGCGUCGGCuGCGa- -3'
miRNA:   3'- ucUGUGGCGGCaa----CGUAGCCG-UGUgg -5'
30703 5' -55.8 NC_006552.1 + 20730 0.66 0.725062
Target:  5'- -uGCGCUGCCGgcGC--CGGCagACGCCc -3'
miRNA:   3'- ucUGUGGCGGCaaCGuaGCCG--UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 29322 0.66 0.725062
Target:  5'- gGGGCcUCGCC--UGCcgUGGCGCGCg -3'
miRNA:   3'- -UCUGuGGCGGcaACGuaGCCGUGUGg -5'
30703 5' -55.8 NC_006552.1 + 2439 0.66 0.725062
Target:  5'- cGGGCGCUGCCGc-GCcugCGaGCgACGCCu -3'
miRNA:   3'- -UCUGUGGCGGCaaCGua-GC-CG-UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 8338 0.66 0.714579
Target:  5'- cGGCAgCGCCGcgGCGagCGGCgaACGCa -3'
miRNA:   3'- uCUGUgGCGGCaaCGUa-GCCG--UGUGg -5'
30703 5' -55.8 NC_006552.1 + 43678 0.66 0.711419
Target:  5'- -uGCGCUGCCGcuUUGCGUgguggucacguccaUGGC-CACCg -3'
miRNA:   3'- ucUGUGGCGGC--AACGUA--------------GCCGuGUGG- -5'
30703 5' -55.8 NC_006552.1 + 50688 0.67 0.704018
Target:  5'- cGGAuCACCuucaccucuucGCCGUUGUcgCGGgC-CGCCa -3'
miRNA:   3'- -UCU-GUGG-----------CGGCAACGuaGCC-GuGUGG- -5'
30703 5' -55.8 NC_006552.1 + 37984 0.67 0.702958
Target:  5'- cGGUACCGCUuggaaugGUcgGCAUCGGCGguCCa -3'
miRNA:   3'- uCUGUGGCGG-------CAa-CGUAGCCGUguGG- -5'
30703 5' -55.8 NC_006552.1 + 32828 0.67 0.693389
Target:  5'- -cACugCGUCGUUGagccaGUCGGC-CACg -3'
miRNA:   3'- ucUGugGCGGCAACg----UAGCCGuGUGg -5'
30703 5' -55.8 NC_006552.1 + 7954 0.67 0.683773
Target:  5'- uGGCACCGCCucgaGCGgaacgcccucgccgaCGGCGCACg -3'
miRNA:   3'- uCUGUGGCGGcaa-CGUa--------------GCCGUGUGg -5'
30703 5' -55.8 NC_006552.1 + 1963 0.67 0.682702
Target:  5'- cGGCACgugCGCCGgcugUGCcuaucgccUCGGCACcCCg -3'
miRNA:   3'- uCUGUG---GCGGCa---ACGu-------AGCCGUGuGG- -5'
30703 5' -55.8 NC_006552.1 + 1202 0.67 0.682702
Target:  5'- ---gGCCGCCaaggGCcuggcCGGCACACCg -3'
miRNA:   3'- ucugUGGCGGcaa-CGua---GCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 64163 0.67 0.671969
Target:  5'- cGGCGCUGCCGg-GCAUCacGCAgGCUc -3'
miRNA:   3'- uCUGUGGCGGCaaCGUAGc-CGUgUGG- -5'
30703 5' -55.8 NC_006552.1 + 38610 0.67 0.671969
Target:  5'- aAGAUGcCCGCCGUuccgGCGaCG-CACACCc -3'
miRNA:   3'- -UCUGU-GGCGGCAa---CGUaGCcGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.