miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30708 5' -58.6 NC_006552.1 + 20311 0.66 0.54975
Target:  5'- aACCaugagUugGGC--AGCGGCCGGCGg -3'
miRNA:   3'- aUGGgua--GugUCGguUCGUCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 29369 0.66 0.543413
Target:  5'- gAUCCAUgGCAGCCuGAGCcGCCGccaguugguuguccuGCGa -3'
miRNA:   3'- aUGGGUAgUGUCGG-UUCGuCGGC---------------CGC- -5'
30708 5' -58.6 NC_006552.1 + 29825 0.66 0.539202
Target:  5'- cGCCCGggAUAuCCGAGagacuGGCCGGCGg -3'
miRNA:   3'- aUGGGUagUGUcGGUUCg----UCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 5739 0.66 0.539202
Target:  5'- -cCCCAcUUggGCGGCUGAGCuGCUGGUGa -3'
miRNA:   3'- auGGGU-AG--UGUCGGUUCGuCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 62548 0.66 0.539202
Target:  5'- gGCCCuUCugGGCUAGGgAccGCgCGGCGc -3'
miRNA:   3'- aUGGGuAGugUCGGUUCgU--CG-GCCGC- -5'
30708 5' -58.6 NC_006552.1 + 38404 0.66 0.528723
Target:  5'- gGCCCgcaGUUGC-GCCuuGcCGGCCGGCGa -3'
miRNA:   3'- aUGGG---UAGUGuCGGuuC-GUCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 52049 0.66 0.518321
Target:  5'- gUGCCCAgcuCGGCCAccagGGCGucGCgGGCGu -3'
miRNA:   3'- -AUGGGUaguGUCGGU----UCGU--CGgCCGC- -5'
30708 5' -58.6 NC_006552.1 + 65002 0.66 0.518321
Target:  5'- aACCCAUgAcCAGUC-AGCAGCCcaucgaacccaaGGCGc -3'
miRNA:   3'- aUGGGUAgU-GUCGGuUCGUCGG------------CCGC- -5'
30708 5' -58.6 NC_006552.1 + 39009 0.66 0.508001
Target:  5'- cGCCCG-CGCcaguaGGCCAGGUgcuuGCCGGuCGg -3'
miRNA:   3'- aUGGGUaGUG-----UCGGUUCGu---CGGCC-GC- -5'
30708 5' -58.6 NC_006552.1 + 30047 0.67 0.497769
Target:  5'- gGCCCuggCAgAGCgCGAacaAGCCGGCGg -3'
miRNA:   3'- aUGGGua-GUgUCG-GUUcg-UCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 19090 0.67 0.497769
Target:  5'- gGCCCccuggGUCAC-GCCGAGCAGCuCcGCu -3'
miRNA:   3'- aUGGG-----UAGUGuCGGUUCGUCG-GcCGc -5'
30708 5' -58.6 NC_006552.1 + 25344 0.67 0.497769
Target:  5'- -gUCC-UCACAGCCGc-CAGUCGGUGg -3'
miRNA:   3'- auGGGuAGUGUCGGUucGUCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 48818 0.67 0.48763
Target:  5'- gGCCCGccCAUAGCCAuccCGGCCaGCGu -3'
miRNA:   3'- aUGGGUa-GUGUCGGUuc-GUCGGcCGC- -5'
30708 5' -58.6 NC_006552.1 + 54227 0.67 0.47759
Target:  5'- cACCCAggccUC-CAGCCAGGCacggaAGUucuCGGCGg -3'
miRNA:   3'- aUGGGU----AGuGUCGGUUCG-----UCG---GCCGC- -5'
30708 5' -58.6 NC_006552.1 + 46927 0.67 0.47759
Target:  5'- cGCuCCGguuggCGCA-CC-AGCAGCCGGCa -3'
miRNA:   3'- aUG-GGUa----GUGUcGGuUCGUCGGCCGc -5'
30708 5' -58.6 NC_006552.1 + 12610 0.67 0.47759
Target:  5'- aGCCUGUCauacaguggaACGGCCAAGacggccugccgcCGGUCGGCGu -3'
miRNA:   3'- aUGGGUAG----------UGUCGGUUC------------GUCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 32387 0.67 0.47759
Target:  5'- aGCCCGg---AGCCAuacaGGCGGUCGGUGa -3'
miRNA:   3'- aUGGGUagugUCGGU----UCGUCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 15427 0.67 0.472608
Target:  5'- cGCCCGgaccagaaguucgucCACGGCCAAauugaacuggccuauGCGGUCGGCu -3'
miRNA:   3'- aUGGGUa--------------GUGUCGGUU---------------CGUCGGCCGc -5'
30708 5' -58.6 NC_006552.1 + 23799 0.67 0.467653
Target:  5'- cACUCAggguCAGCCAGGCAGCgcgccaguuCGGCc -3'
miRNA:   3'- aUGGGUagu-GUCGGUUCGUCG---------GCCGc -5'
30708 5' -58.6 NC_006552.1 + 21127 0.67 0.466665
Target:  5'- cGCCCGgcgcgcuuccucuUCGCcGCCGcGCucuuGGCCGGCGc -3'
miRNA:   3'- aUGGGU-------------AGUGuCGGUuCG----UCGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.