miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30709 5' -51.3 NC_006552.1 + 37583 0.66 0.920637
Target:  5'- ---aUGCC-CAGguaggUGCUgAUGCGCGCCg -3'
miRNA:   3'- caagACGGcGUUa----ACGG-UACGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 22340 0.66 0.920637
Target:  5'- -aUCUGCUGCug--GCUGUGCAguUCc -3'
miRNA:   3'- caAGACGGCGuuaaCGGUACGUguGG- -5'
30709 5' -51.3 NC_006552.1 + 36516 0.66 0.914292
Target:  5'- -aUCUGCgGCGGc-GCCAcGC-CGCCu -3'
miRNA:   3'- caAGACGgCGUUaaCGGUaCGuGUGG- -5'
30709 5' -51.3 NC_006552.1 + 2434 0.66 0.914292
Target:  5'- --gCUGCCGCGccUGCgA-GCgACGCCu -3'
miRNA:   3'- caaGACGGCGUuaACGgUaCG-UGUGG- -5'
30709 5' -51.3 NC_006552.1 + 50944 0.66 0.914292
Target:  5'- --cCUGUCGUAGUUggcGCCGUaaccuCGCACCa -3'
miRNA:   3'- caaGACGGCGUUAA---CGGUAc----GUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 62812 0.66 0.914292
Target:  5'- -gUCUGCCucuaacagcaGCGAUaGCgAUGUGCAUCu -3'
miRNA:   3'- caAGACGG----------CGUUAaCGgUACGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 2569 0.66 0.914292
Target:  5'- -gUCUGcCCGCA--UGCCA-GCguucgaccagcaGCACCc -3'
miRNA:   3'- caAGAC-GGCGUuaACGGUaCG------------UGUGG- -5'
30709 5' -51.3 NC_006552.1 + 55809 0.66 0.907655
Target:  5'- --aCUGCCGCGcacGUcGCCccgugcgGCGCGCUu -3'
miRNA:   3'- caaGACGGCGU---UAaCGGua-----CGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 32852 0.66 0.907655
Target:  5'- --cCUGCCGCGcacggcgGCUucGCGCACUg -3'
miRNA:   3'- caaGACGGCGUuaa----CGGuaCGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 44676 0.66 0.90073
Target:  5'- aUUCgGCCGCcuucaGCCGgccuugcucGCGCACCa -3'
miRNA:   3'- cAAGaCGGCGuuaa-CGGUa--------CGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 19485 0.66 0.898596
Target:  5'- ----aGCCGCAcgagugugaugGUUGCUGUGCucgacagaucgaucACACCg -3'
miRNA:   3'- caagaCGGCGU-----------UAACGGUACG--------------UGUGG- -5'
30709 5' -51.3 NC_006552.1 + 43564 0.66 0.893519
Target:  5'- uUUCccgGUCGCGAUucUGCCG-GC-CACCg -3'
miRNA:   3'- cAAGa--CGGCGUUA--ACGGUaCGuGUGG- -5'
30709 5' -51.3 NC_006552.1 + 45458 0.67 0.886028
Target:  5'- --gUUGgCGCug--GCCGcUGCGCGCCa -3'
miRNA:   3'- caaGACgGCGuuaaCGGU-ACGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 29671 0.67 0.861925
Target:  5'- -aUCgGCCGCGG-UGCCGUcuuccaGCACCu -3'
miRNA:   3'- caAGaCGGCGUUaACGGUAcg----UGUGG- -5'
30709 5' -51.3 NC_006552.1 + 13207 0.67 0.861081
Target:  5'- ----cGCCaGCAGcgagagcUUGCCGcgGCGCGCCa -3'
miRNA:   3'- caagaCGG-CGUU-------AACGGUa-CGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 39393 0.67 0.853372
Target:  5'- --aCgGCCGguGaUGCCGgcgaGCACGCCc -3'
miRNA:   3'- caaGaCGGCguUaACGGUa---CGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 57967 0.67 0.853372
Target:  5'- --gCUGCCGCGg--GCC-UGCGcCAUCa -3'
miRNA:   3'- caaGACGGCGUuaaCGGuACGU-GUGG- -5'
30709 5' -51.3 NC_006552.1 + 52577 0.68 0.826274
Target:  5'- -gUCgccgGCCGUAGUcUGCCcgGCGCugGCUa -3'
miRNA:   3'- caAGa---CGGCGUUA-ACGGuaCGUG--UGG- -5'
30709 5' -51.3 NC_006552.1 + 12070 0.68 0.826274
Target:  5'- -cUCUGCUcuGCGA-UGCCGccgGCaACACCa -3'
miRNA:   3'- caAGACGG--CGUUaACGGUa--CG-UGUGG- -5'
30709 5' -51.3 NC_006552.1 + 9837 0.68 0.826274
Target:  5'- gGUUCaGCCGCGAg-GCgGUGgaACACCu -3'
miRNA:   3'- -CAAGaCGGCGUUaaCGgUACg-UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.