miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30711 3' -51.4 NC_006552.1 + 11837 0.66 0.947517
Target:  5'- gCGCugauGCGCUACCaGGaCGAGgaugCG-GCCa -3'
miRNA:   3'- gGUGu---UGCGAUGG-CC-GUUCa---GCaUGG- -5'
30711 3' -51.4 NC_006552.1 + 60443 0.66 0.947517
Target:  5'- aCCAgcuuCGGCGgUGCCGGCug--CGUcACCu -3'
miRNA:   3'- -GGU----GUUGCgAUGGCCGuucaGCA-UGG- -5'
30711 3' -51.4 NC_006552.1 + 11611 0.66 0.947517
Target:  5'- uCgAUGugGC-GCCGGCcAGUUcgGUGCCg -3'
miRNA:   3'- -GgUGUugCGaUGGCCGuUCAG--CAUGG- -5'
30711 3' -51.4 NC_006552.1 + 9528 0.66 0.947053
Target:  5'- uCCGCGACuucaucgGCUGCCaGGaagGGGUCGaucGCCg -3'
miRNA:   3'- -GGUGUUG-------CGAUGG-CCg--UUCAGCa--UGG- -5'
30711 3' -51.4 NC_006552.1 + 26230 0.66 0.942748
Target:  5'- gCGCGAUGUUgugcGCCaGGUuguucGGGUCGUACUc -3'
miRNA:   3'- gGUGUUGCGA----UGG-CCG-----UUCAGCAUGG- -5'
30711 3' -51.4 NC_006552.1 + 51815 0.66 0.937704
Target:  5'- aCGCGGCGUUucgacuCCGGCAcGcUCaUGCCg -3'
miRNA:   3'- gGUGUUGCGAu-----GGCCGUuC-AGcAUGG- -5'
30711 3' -51.4 NC_006552.1 + 38402 0.66 0.937704
Target:  5'- cCCGCAguuGCGCcuugccgGCCGGCGacaGGUCuauGUucACCg -3'
miRNA:   3'- -GGUGU---UGCGa------UGGCCGU---UCAG---CA--UGG- -5'
30711 3' -51.4 NC_006552.1 + 31559 0.66 0.937185
Target:  5'- cCCACGucaGCGgUcacGCCGGCAccgaaguGGUCGgaaaucACCa -3'
miRNA:   3'- -GGUGU---UGCgA---UGGCCGU-------UCAGCa-----UGG- -5'
30711 3' -51.4 NC_006552.1 + 35546 0.66 0.932385
Target:  5'- aUugGACGCUGgCGGCA---CGUaGCCg -3'
miRNA:   3'- gGugUUGCGAUgGCCGUucaGCA-UGG- -5'
30711 3' -51.4 NC_006552.1 + 12658 0.66 0.92679
Target:  5'- aCGCAugGCgACUGGUGGaacGUCGU-CCu -3'
miRNA:   3'- gGUGUugCGaUGGCCGUU---CAGCAuGG- -5'
30711 3' -51.4 NC_006552.1 + 59896 0.66 0.92679
Target:  5'- gCGCAucgaGCUACCGcGCcAGUUGgugaUGCCg -3'
miRNA:   3'- gGUGUug--CGAUGGC-CGuUCAGC----AUGG- -5'
30711 3' -51.4 NC_006552.1 + 34622 0.66 0.92679
Target:  5'- uCCACAGCGCcgggAUUGGUAGcagcGUCGcACUa -3'
miRNA:   3'- -GGUGUUGCGa---UGGCCGUU----CAGCaUGG- -5'
30711 3' -51.4 NC_006552.1 + 13070 0.66 0.926215
Target:  5'- gCC-CAGCGCUACCcaguGGCGcgcccgcGUCGUugauaaaACCg -3'
miRNA:   3'- -GGuGUUGCGAUGG----CCGUu------CAGCA-------UGG- -5'
30711 3' -51.4 NC_006552.1 + 65136 0.67 0.908342
Target:  5'- cCCuuCGACGCUcaacguGCgCGGCAuGGUUGUauGCCg -3'
miRNA:   3'- -GGu-GUUGCGA------UG-GCCGU-UCAGCA--UGG- -5'
30711 3' -51.4 NC_006552.1 + 53707 0.67 0.894675
Target:  5'- gUACu-CGCUGCCGGUGAGga-UGCCc -3'
miRNA:   3'- gGUGuuGCGAUGGCCGUUCagcAUGG- -5'
30711 3' -51.4 NC_006552.1 + 63284 0.68 0.887441
Target:  5'- gCUACGACGUgcucgaCGGCGGcGUCGUugUc -3'
miRNA:   3'- -GGUGUUGCGaug---GCCGUU-CAGCAugG- -5'
30711 3' -51.4 NC_006552.1 + 20736 0.68 0.885219
Target:  5'- -aGCAacuGCGCUGCCGGCGccggcagacgccccAGgCGUuCCg -3'
miRNA:   3'- ggUGU---UGCGAUGGCCGU--------------UCaGCAuGG- -5'
30711 3' -51.4 NC_006552.1 + 24046 0.68 0.879945
Target:  5'- gCCGCAGCGCUggucGCCGuugaacagcGCAuGGUCcaGCCa -3'
miRNA:   3'- -GGUGUUGCGA----UGGC---------CGU-UCAGcaUGG- -5'
30711 3' -51.4 NC_006552.1 + 113 0.68 0.872194
Target:  5'- aCCugGACGCcGCCGGCGccggcaaacgaAG-CGggaGCCc -3'
miRNA:   3'- -GGugUUGCGaUGGCCGU-----------UCaGCa--UGG- -5'
30711 3' -51.4 NC_006552.1 + 44017 0.68 0.872194
Target:  5'- gCCGCGuCGgUGCCGGCAcaucCGcUACCg -3'
miRNA:   3'- -GGUGUuGCgAUGGCCGUuca-GC-AUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.