miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30713 5' -61.9 NC_006552.1 + 61557 0.66 0.437705
Target:  5'- -gGACGCaagCACUCGCCac-CGCCCCAg -3'
miRNA:   3'- gaUUGCG---GUGGGCGGcucGCGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 49851 0.66 0.437705
Target:  5'- --uGCGCCACCgGCuCGAcgccGCGUcggacgCCCGCu -3'
miRNA:   3'- gauUGCGGUGGgCG-GCU----CGCG------GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 43721 0.66 0.428566
Target:  5'- -gAACGCCAacgacuCCgGCaCGAggcgcgacacGCGCCCCAg -3'
miRNA:   3'- gaUUGCGGU------GGgCG-GCU----------CGCGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 61648 0.66 0.419541
Target:  5'- -cGAgGCCGCCgGCCGgacguccaaccuGGcCGCCgCACg -3'
miRNA:   3'- gaUUgCGGUGGgCGGC------------UC-GCGGgGUG- -5'
30713 5' -61.9 NC_006552.1 + 37901 0.66 0.419541
Target:  5'- aCUGAuuuCGCUAUCCGCCuuGCGUCCUu- -3'
miRNA:   3'- -GAUU---GCGGUGGGCGGcuCGCGGGGug -5'
30713 5' -61.9 NC_006552.1 + 26779 0.66 0.410631
Target:  5'- cCUGGCGCacagagGCCCGCaguuGCGCCUUGCc -3'
miRNA:   3'- -GAUUGCGg-----UGGGCGgcu-CGCGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 38463 0.66 0.410631
Target:  5'- -gGAUGCCGCUggugGCCGugccuuuGCGCCCCu- -3'
miRNA:   3'- gaUUGCGGUGGg---CGGCu------CGCGGGGug -5'
30713 5' -61.9 NC_006552.1 + 871 0.66 0.405343
Target:  5'- --uGCGCUGCcuuuccggcuaucguCCGCCcAGCGCCCCu- -3'
miRNA:   3'- gauUGCGGUG---------------GGCGGcUCGCGGGGug -5'
30713 5' -61.9 NC_006552.1 + 58535 0.66 0.401841
Target:  5'- -cAACGau-CCCGCUGAGCcGCugCCCACu -3'
miRNA:   3'- gaUUGCgguGGGCGGCUCG-CG--GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 47089 0.66 0.39317
Target:  5'- aCUGAgccCGCuccCACCCGCCuGGCcaGCCCCGu -3'
miRNA:   3'- -GAUU---GCG---GUGGGCGGcUCG--CGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 52263 0.67 0.388027
Target:  5'- -aAACGCUgaAUCUGCCGGGCgugaucgucgaaaagGCcCCCGCg -3'
miRNA:   3'- gaUUGCGG--UGGGCGGCUCG---------------CG-GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 59865 0.67 0.384622
Target:  5'- gCUAcCGCggaACCUGUCGAGgGCCUgACg -3'
miRNA:   3'- -GAUuGCGg--UGGGCGGCUCgCGGGgUG- -5'
30713 5' -61.9 NC_006552.1 + 64647 0.67 0.384622
Target:  5'- gCUGuuCGCCGCgCCGCCGGucaGCUUCGCg -3'
miRNA:   3'- -GAUu-GCGGUG-GGCGGCUcg-CGGGGUG- -5'
30713 5' -61.9 NC_006552.1 + 45919 0.67 0.3679
Target:  5'- -cAGCGCCugCUG-CGAGUucaGCcCCCACu -3'
miRNA:   3'- gaUUGCGGugGGCgGCUCG---CG-GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 16430 0.67 0.3679
Target:  5'- ----gGCCGCUCGCCcAGUcccGCCCCAg -3'
miRNA:   3'- gauugCGGUGGGCGGcUCG---CGGGGUg -5'
30713 5' -61.9 NC_006552.1 + 19739 0.67 0.3679
Target:  5'- uUGGCGCUGgCCGCUGcGCGCCagGCu -3'
miRNA:   3'- gAUUGCGGUgGGCGGCuCGCGGggUG- -5'
30713 5' -61.9 NC_006552.1 + 52014 0.67 0.3679
Target:  5'- --cGCGCCagcaACUCGCCGAGCaggagacaCCCGCc -3'
miRNA:   3'- gauUGCGG----UGGGCGGCUCGcg------GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 7452 0.67 0.359728
Target:  5'- gCUGACGCgacggACCCGCCGAgguacuGCGCaaacagcagUCCGCg -3'
miRNA:   3'- -GAUUGCGg----UGGGCGGCU------CGCG---------GGGUG- -5'
30713 5' -61.9 NC_006552.1 + 10680 0.67 0.359728
Target:  5'- -aAGCGCCACuuGCCaucAGUGCCgCGg -3'
miRNA:   3'- gaUUGCGGUGggCGGc--UCGCGGgGUg -5'
30713 5' -61.9 NC_006552.1 + 55522 0.67 0.351683
Target:  5'- -gGACGUCAcCCCGUCGAGCcaCCUCGa -3'
miRNA:   3'- gaUUGCGGU-GGGCGGCUCGc-GGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.