miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30714 5' -61 NC_006552.1 + 54734 0.66 0.487442
Target:  5'- -gGCGCaggcgaGCCaGCGCAGuGC-CGCCUUc -3'
miRNA:   3'- gaUGCGg-----UGG-CGCGUC-CGuGCGGAGc -5'
30714 5' -61 NC_006552.1 + 48413 0.66 0.487442
Target:  5'- cCUuCGCCAgCCGCGCcGGC-UGCCa-- -3'
miRNA:   3'- -GAuGCGGU-GGCGCGuCCGuGCGGagc -5'
30714 5' -61 NC_006552.1 + 3493 0.66 0.477732
Target:  5'- -cACGCCggcauccucACCGCGCgcGGGUACGCg--- -3'
miRNA:   3'- gaUGCGG---------UGGCGCG--UCCGUGCGgagc -5'
30714 5' -61 NC_006552.1 + 22900 0.66 0.477732
Target:  5'- -gGCGCCAggCGUGCAGaaacuccgguaGCGCGCUUCu -3'
miRNA:   3'- gaUGCGGUg-GCGCGUC-----------CGUGCGGAGc -5'
30714 5' -61 NC_006552.1 + 45141 0.66 0.477732
Target:  5'- aUACGCCugcacguCUGCGC-GGUAgGCgUCGa -3'
miRNA:   3'- gAUGCGGu------GGCGCGuCCGUgCGgAGC- -5'
30714 5' -61 NC_006552.1 + 38470 0.66 0.468119
Target:  5'- -gGCGUCGCCGUGCaguGGGCuuUGCCa-- -3'
miRNA:   3'- gaUGCGGUGGCGCG---UCCGu-GCGGagc -5'
30714 5' -61 NC_006552.1 + 16509 0.66 0.468119
Target:  5'- uCUACGCCcggguUgGCGCcguccGGCcCGCCUCa -3'
miRNA:   3'- -GAUGCGGu----GgCGCGu----CCGuGCGGAGc -5'
30714 5' -61 NC_006552.1 + 52832 0.66 0.458606
Target:  5'- -gGCGUCGCgGCGCGcuucugcaacGGCcuGCGCgUCGg -3'
miRNA:   3'- gaUGCGGUGgCGCGU----------CCG--UGCGgAGC- -5'
30714 5' -61 NC_006552.1 + 12882 0.66 0.458606
Target:  5'- cCUGacuaGCCACCucGCGCcGGCcACGCCg-- -3'
miRNA:   3'- -GAUg---CGGUGG--CGCGuCCG-UGCGGagc -5'
30714 5' -61 NC_006552.1 + 2737 0.66 0.452948
Target:  5'- -gGCGCCGCUGCGCcucaccgaguggaaaGaaGGCGCGCUg-- -3'
miRNA:   3'- gaUGCGGUGGCGCG---------------U--CCGUGCGGagc -5'
30714 5' -61 NC_006552.1 + 53622 0.66 0.449197
Target:  5'- uUGCuGCCACUGCGCcGGCccaGgGCCUg- -3'
miRNA:   3'- gAUG-CGGUGGCGCGuCCG---UgCGGAgc -5'
30714 5' -61 NC_006552.1 + 55770 0.66 0.448262
Target:  5'- ---aGCCAUCGCGUAGGCcaccaaaucauccACGCUUa- -3'
miRNA:   3'- gaugCGGUGGCGCGUCCG-------------UGCGGAgc -5'
30714 5' -61 NC_006552.1 + 43768 0.66 0.439896
Target:  5'- --gUGCCuGCCGCGCAGGCcccgGCCg-- -3'
miRNA:   3'- gauGCGG-UGGCGCGUCCGug--CGGagc -5'
30714 5' -61 NC_006552.1 + 39617 0.66 0.439896
Target:  5'- gUACGCUgaGCCGCGggaAGGCaAUGCCguuuUCGg -3'
miRNA:   3'- gAUGCGG--UGGCGCg--UCCG-UGCGG----AGC- -5'
30714 5' -61 NC_006552.1 + 1965 0.66 0.439896
Target:  5'- -cGCGgCACgUGCGCcGGCugugccuauCGCCUCGg -3'
miRNA:   3'- gaUGCgGUG-GCGCGuCCGu--------GCGGAGC- -5'
30714 5' -61 NC_006552.1 + 4640 0.66 0.439896
Target:  5'- --uCGCCGgcgacUCGcCGCAGGCAUGucCCUCGa -3'
miRNA:   3'- gauGCGGU-----GGC-GCGUCCGUGC--GGAGC- -5'
30714 5' -61 NC_006552.1 + 50673 0.66 0.439896
Target:  5'- uCUuCGCCGuuGuCGCGGGC-CGCCa-- -3'
miRNA:   3'- -GAuGCGGUggC-GCGUCCGuGCGGagc -5'
30714 5' -61 NC_006552.1 + 52471 0.67 0.430705
Target:  5'- aUACGCUguuCCgGCGuCAGGCgcaugaACGCCUCc -3'
miRNA:   3'- gAUGCGGu--GG-CGC-GUCCG------UGCGGAGc -5'
30714 5' -61 NC_006552.1 + 59764 0.67 0.403825
Target:  5'- gCUGCGCgccaguuguuCGCCGCGCuGGCGgGUgaUCGg -3'
miRNA:   3'- -GAUGCG----------GUGGCGCGuCCGUgCGg-AGC- -5'
30714 5' -61 NC_006552.1 + 58053 0.67 0.395103
Target:  5'- -cAgGCCAUCGa-CAGGCGCGCCa-- -3'
miRNA:   3'- gaUgCGGUGGCgcGUCCGUGCGGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.