miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30721 3' -54 NC_006552.1 + 39652 0.66 0.842829
Target:  5'- uGCuGGCGaCGCAGCAacUCGGUaUCGAg- -3'
miRNA:   3'- gCG-CCGC-GUGUUGU--AGUCGaAGCUgc -5'
30721 3' -54 NC_006552.1 + 19644 0.66 0.825088
Target:  5'- uCGCGGUGUACucGCugAUCuGCauUUCGGCGu -3'
miRNA:   3'- -GCGCCGCGUGu-UG--UAGuCG--AAGCUGC- -5'
30721 3' -54 NC_006552.1 + 50302 0.66 0.815912
Target:  5'- cCGCcgGGCGCuCAccgaaguuGCGUCGGCaaUCGGCGu -3'
miRNA:   3'- -GCG--CCGCGuGU--------UGUAGUCGa-AGCUGC- -5'
30721 3' -54 NC_006552.1 + 50102 0.66 0.815912
Target:  5'- gGCGGaaCGCGCAGCA-CGGCggCG-CGu -3'
miRNA:   3'- gCGCC--GCGUGUUGUaGUCGaaGCuGC- -5'
30721 3' -54 NC_006552.1 + 27893 0.66 0.815912
Target:  5'- uGauGCGCAC--CGUCGGCUccUCGAUGu -3'
miRNA:   3'- gCgcCGCGUGuuGUAGUCGA--AGCUGC- -5'
30721 3' -54 NC_006552.1 + 61193 0.66 0.806545
Target:  5'- aGCcuGCGC-CGAUAUCGGCUgcuggggCGACa -3'
miRNA:   3'- gCGc-CGCGuGUUGUAGUCGAa------GCUGc -5'
30721 3' -54 NC_006552.1 + 33540 0.66 0.806545
Target:  5'- gCGCaGGCGCGCAGCGgccgaCAGCagcaGGCc -3'
miRNA:   3'- -GCG-CCGCGUGUUGUa----GUCGaag-CUGc -5'
30721 3' -54 NC_006552.1 + 5677 0.66 0.806545
Target:  5'- uCGauGCGgGCAGCGcucUCGGCUgauucgCGGCGg -3'
miRNA:   3'- -GCgcCGCgUGUUGU---AGUCGAa-----GCUGC- -5'
30721 3' -54 NC_006552.1 + 9727 0.66 0.806545
Target:  5'- aCGCuGGCGCGauuCAUCAGCa-UGGCGc -3'
miRNA:   3'- -GCG-CCGCGUguuGUAGUCGaaGCUGC- -5'
30721 3' -54 NC_006552.1 + 14739 0.66 0.806545
Target:  5'- cCGCGGUGCuCGGCcuugaucugCGGCaugUCGGCGc -3'
miRNA:   3'- -GCGCCGCGuGUUGua-------GUCGa--AGCUGC- -5'
30721 3' -54 NC_006552.1 + 26163 0.66 0.806545
Target:  5'- aCGuUGGCGCGCGcgAUCAGCa--GACGc -3'
miRNA:   3'- -GC-GCCGCGUGUugUAGUCGaagCUGC- -5'
30721 3' -54 NC_006552.1 + 10701 0.67 0.796996
Target:  5'- cCGCGGUGC-CAGC--CGGUaucUCGACGa -3'
miRNA:   3'- -GCGCCGCGuGUUGuaGUCGa--AGCUGC- -5'
30721 3' -54 NC_006552.1 + 8506 0.67 0.787278
Target:  5'- aCGCauGGCGCGCu-CAgcCAGCgaaUCGACGc -3'
miRNA:   3'- -GCG--CCGCGUGuuGUa-GUCGa--AGCUGC- -5'
30721 3' -54 NC_006552.1 + 2700 0.67 0.787278
Target:  5'- aGUGGCGCAuggacgcuucuuCAGCG-CAGCUU-GGCGc -3'
miRNA:   3'- gCGCCGCGU------------GUUGUaGUCGAAgCUGC- -5'
30721 3' -54 NC_006552.1 + 44179 0.67 0.777399
Target:  5'- cCGCGGCGCGcCGACGguccaugucuUCGcGC-UCGugGc -3'
miRNA:   3'- -GCGCCGCGU-GUUGU----------AGU-CGaAGCugC- -5'
30721 3' -54 NC_006552.1 + 4254 0.67 0.777399
Target:  5'- gGCaGGCGCAUAGuuUCccGCUUUGGCGg -3'
miRNA:   3'- gCG-CCGCGUGUUguAGu-CGAAGCUGC- -5'
30721 3' -54 NC_006552.1 + 61387 0.67 0.767372
Target:  5'- -uUGGCGCGcCGGCggCGGCUacaccacgaaccUCGACGa -3'
miRNA:   3'- gcGCCGCGU-GUUGuaGUCGA------------AGCUGC- -5'
30721 3' -54 NC_006552.1 + 49713 0.67 0.767372
Target:  5'- gCGCGGUGCugAugAUCgaggaaGGCaUUaCGGCGa -3'
miRNA:   3'- -GCGCCGCGugUugUAG------UCG-AA-GCUGC- -5'
30721 3' -54 NC_006552.1 + 37777 0.67 0.757207
Target:  5'- cCGCGcucuGCauCACAGCGUCGGCgaUCGGCGc -3'
miRNA:   3'- -GCGC----CGc-GUGUUGUAGUCGa-AGCUGC- -5'
30721 3' -54 NC_006552.1 + 64751 0.67 0.746915
Target:  5'- gGUGGCGCuCAACAUCGuccaacGCgccacCGACGc -3'
miRNA:   3'- gCGCCGCGuGUUGUAGU------CGaa---GCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.