miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30729 3' -55.8 NC_006552.1 + 32478 0.66 0.722371
Target:  5'- cGCGCCACcgaacuggucgAugCGCGC-GUGgaCGGCa -3'
miRNA:   3'- uCGCGGUG-----------UugGCGCGuCGCaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 26154 0.66 0.722371
Target:  5'- aAGCGCagCACGuuGgCGCGC-GCGaUCAGCa -3'
miRNA:   3'- -UCGCG--GUGU--UgGCGCGuCGCaAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 28799 0.66 0.711724
Target:  5'- cAGCGUCcacuGCGACCaGgGUGGCGgguUCAACu -3'
miRNA:   3'- -UCGCGG----UGUUGG-CgCGUCGCa--AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 56861 0.66 0.700998
Target:  5'- cAGCGCCGCGGCga-GCGGCGaacgCAGg -3'
miRNA:   3'- -UCGCGGUGUUGgcgCGUCGCaa--GUUg -5'
30729 3' -55.8 NC_006552.1 + 30578 0.66 0.700998
Target:  5'- cAGCGCCGgGAUUGguaGCAGCGUcgCAc- -3'
miRNA:   3'- -UCGCGGUgUUGGCg--CGUCGCAa-GUug -5'
30729 3' -55.8 NC_006552.1 + 44369 0.66 0.700998
Target:  5'- cAGUGCCAgCAGCCGguCGgAGgGUccagUCAGCa -3'
miRNA:   3'- -UCGCGGU-GUUGGC--GCgUCgCA----AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 8222 0.66 0.700998
Target:  5'- -uCGCCGCcGaaGCGCAGCaugUCGGCg -3'
miRNA:   3'- ucGCGGUGuUggCGCGUCGca-AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 36112 0.66 0.700998
Target:  5'- cGCGCC-CuGCUGCGCgccAGUGUUCu-- -3'
miRNA:   3'- uCGCGGuGuUGGCGCG---UCGCAAGuug -5'
30729 3' -55.8 NC_006552.1 + 16020 0.66 0.699921
Target:  5'- uGCGCCACuguccacGGCCuGCGCAGCa------ -3'
miRNA:   3'- uCGCGGUG-------UUGG-CGCGUCGcaaguug -5'
30729 3' -55.8 NC_006552.1 + 26866 0.66 0.679358
Target:  5'- cGcCGCCGCGuuGCaGCGCGGCaucUUCGGCg -3'
miRNA:   3'- uC-GCGGUGU--UGgCGCGUCGc--AAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 21168 0.66 0.679358
Target:  5'- aGGCGCaucCGGCCGCGuCGGUGc-CGGCa -3'
miRNA:   3'- -UCGCGgu-GUUGGCGC-GUCGCaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 10750 0.66 0.679358
Target:  5'- uGGCGaugCGCuGCUGCGCGGUGcUCAGg -3'
miRNA:   3'- -UCGCg--GUGuUGGCGCGUCGCaAGUUg -5'
30729 3' -55.8 NC_006552.1 + 65035 0.67 0.668466
Target:  5'- cGCGCCACucGCUGgGCAGagGUugaaaUCGACc -3'
miRNA:   3'- uCGCGGUGu-UGGCgCGUCg-CA-----AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 31992 0.67 0.668466
Target:  5'- cGGCGUgAaucucCGGCUGCGCGGUGUccuugUCGGCc -3'
miRNA:   3'- -UCGCGgU-----GUUGGCGCGUCGCA-----AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 19616 0.67 0.668466
Target:  5'- uGCGCCu--GCUGUaCGGCGUUCuGCa -3'
miRNA:   3'- uCGCGGuguUGGCGcGUCGCAAGuUG- -5'
30729 3' -55.8 NC_006552.1 + 54361 0.67 0.667375
Target:  5'- uGCuGCCGCAAggaggagaagaucCUGCcugGCAGCGUggUCAACg -3'
miRNA:   3'- uCG-CGGUGUU-------------GGCG---CGUCGCA--AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 6149 0.67 0.665191
Target:  5'- uGCGCCGauucCAaucggcuauugcuuGCCGCGC-GCGcUCAACc -3'
miRNA:   3'- uCGCGGU----GU--------------UGGCGCGuCGCaAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 55165 0.67 0.65754
Target:  5'- cGGCaCCcCGACCGUGCuccauGCGcgCGACg -3'
miRNA:   3'- -UCGcGGuGUUGGCGCGu----CGCaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 35284 0.67 0.65754
Target:  5'- cGGgGCUcauGCCGCGCagGGCGUcCGACa -3'
miRNA:   3'- -UCgCGGuguUGGCGCG--UCGCAaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 4830 0.67 0.65754
Target:  5'- cGCGCacaggGCggUCGCGCAGCucacCAGCa -3'
miRNA:   3'- uCGCGg----UGuuGGCGCGUCGcaa-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.