Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30729 | 3' | -55.8 | NC_006552.1 | + | 26154 | 0.66 | 0.722371 |
Target: 5'- aAGCGCagCACGuuGgCGCGC-GCGaUCAGCa -3' miRNA: 3'- -UCGCG--GUGU--UgGCGCGuCGCaAGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 32478 | 0.66 | 0.722371 |
Target: 5'- cGCGCCACcgaacuggucgAugCGCGC-GUGgaCGGCa -3' miRNA: 3'- uCGCGGUG-----------UugGCGCGuCGCaaGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 28799 | 0.66 | 0.711724 |
Target: 5'- cAGCGUCcacuGCGACCaGgGUGGCGgguUCAACu -3' miRNA: 3'- -UCGCGG----UGUUGG-CgCGUCGCa--AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 36112 | 0.66 | 0.700998 |
Target: 5'- cGCGCC-CuGCUGCGCgccAGUGUUCu-- -3' miRNA: 3'- uCGCGGuGuUGGCGCG---UCGCAAGuug -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 8222 | 0.66 | 0.700998 |
Target: 5'- -uCGCCGCcGaaGCGCAGCaugUCGGCg -3' miRNA: 3'- ucGCGGUGuUggCGCGUCGca-AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 30578 | 0.66 | 0.700998 |
Target: 5'- cAGCGCCGgGAUUGguaGCAGCGUcgCAc- -3' miRNA: 3'- -UCGCGGUgUUGGCg--CGUCGCAa-GUug -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 56861 | 0.66 | 0.700998 |
Target: 5'- cAGCGCCGCGGCga-GCGGCGaacgCAGg -3' miRNA: 3'- -UCGCGGUGUUGgcgCGUCGCaa--GUUg -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 44369 | 0.66 | 0.700998 |
Target: 5'- cAGUGCCAgCAGCCGguCGgAGgGUccagUCAGCa -3' miRNA: 3'- -UCGCGGU-GUUGGC--GCgUCgCA----AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 16020 | 0.66 | 0.699921 |
Target: 5'- uGCGCCACuguccacGGCCuGCGCAGCa------ -3' miRNA: 3'- uCGCGGUG-------UUGG-CGCGUCGcaaguug -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 21168 | 0.66 | 0.679358 |
Target: 5'- aGGCGCaucCGGCCGCGuCGGUGc-CGGCa -3' miRNA: 3'- -UCGCGgu-GUUGGCGC-GUCGCaaGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 26866 | 0.66 | 0.679358 |
Target: 5'- cGcCGCCGCGuuGCaGCGCGGCaucUUCGGCg -3' miRNA: 3'- uC-GCGGUGU--UGgCGCGUCGc--AAGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 10750 | 0.66 | 0.679358 |
Target: 5'- uGGCGaugCGCuGCUGCGCGGUGcUCAGg -3' miRNA: 3'- -UCGCg--GUGuUGGCGCGUCGCaAGUUg -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 65035 | 0.67 | 0.668466 |
Target: 5'- cGCGCCACucGCUGgGCAGagGUugaaaUCGACc -3' miRNA: 3'- uCGCGGUGu-UGGCgCGUCg-CA-----AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 31992 | 0.67 | 0.668466 |
Target: 5'- cGGCGUgAaucucCGGCUGCGCGGUGUccuugUCGGCc -3' miRNA: 3'- -UCGCGgU-----GUUGGCGCGUCGCA-----AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 19616 | 0.67 | 0.668466 |
Target: 5'- uGCGCCu--GCUGUaCGGCGUUCuGCa -3' miRNA: 3'- uCGCGGuguUGGCGcGUCGCAAGuUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 54361 | 0.67 | 0.667375 |
Target: 5'- uGCuGCCGCAAggaggagaagaucCUGCcugGCAGCGUggUCAACg -3' miRNA: 3'- uCG-CGGUGUU-------------GGCG---CGUCGCA--AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 6149 | 0.67 | 0.665191 |
Target: 5'- uGCGCCGauucCAaucggcuauugcuuGCCGCGC-GCGcUCAACc -3' miRNA: 3'- uCGCGGU----GU--------------UGGCGCGuCGCaAGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 55165 | 0.67 | 0.65754 |
Target: 5'- cGGCaCCcCGACCGUGCuccauGCGcgCGACg -3' miRNA: 3'- -UCGcGGuGUUGGCGCGu----CGCaaGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 35284 | 0.67 | 0.65754 |
Target: 5'- cGGgGCUcauGCCGCGCagGGCGUcCGACa -3' miRNA: 3'- -UCgCGGuguUGGCGCG--UCGCAaGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 4830 | 0.67 | 0.65754 |
Target: 5'- cGCGCacaggGCggUCGCGCAGCucacCAGCa -3' miRNA: 3'- uCGCGg----UGuuGGCGCGUCGcaa-GUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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