miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30733 5' -50.3 NC_006552.1 + 56767 0.66 0.959929
Target:  5'- uUGCCCG-UGAAGaguuCGAa--GCCAGCUa -3'
miRNA:   3'- uAUGGGCuACUUC----GCUuugCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 51543 0.66 0.955834
Target:  5'- -gACgCCGAggcGAAGCGGAucacCGCCGcACUg -3'
miRNA:   3'- uaUG-GGCUa--CUUCGCUUu---GCGGU-UGG- -5'
30733 5' -50.3 NC_006552.1 + 58599 0.66 0.955834
Target:  5'- -aGCCCGuUGAuggugGGCGucgGugGCCGcGCCg -3'
miRNA:   3'- uaUGGGCuACU-----UCGCu--UugCGGU-UGG- -5'
30733 5' -50.3 NC_006552.1 + 45387 0.66 0.955834
Target:  5'- -gGCCCGGgcucuuGCucGGCGCCGACg -3'
miRNA:   3'- uaUGGGCUacuu--CGcuUUGCGGUUGg -5'
30733 5' -50.3 NC_006552.1 + 35558 0.66 0.955834
Target:  5'- gAUGCUCGcgcgcucauAUGAcGGaCGGGACGCCAcCCa -3'
miRNA:   3'- -UAUGGGC---------UACU-UC-GCUUUGCGGUuGG- -5'
30733 5' -50.3 NC_006552.1 + 4371 0.66 0.955834
Target:  5'- uUugCCGAUGAca-GAAGCGUCAgugauguccuccACCa -3'
miRNA:   3'- uAugGGCUACUucgCUUUGCGGU------------UGG- -5'
30733 5' -50.3 NC_006552.1 + 32299 0.66 0.951464
Target:  5'- -cACCuCGAUGcGGCacacGGCGUCGGCCu -3'
miRNA:   3'- uaUGG-GCUACuUCGcu--UUGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 54565 0.66 0.951464
Target:  5'- -gGCCUGGUGAucGUGGAcacCGCCAcggcgaagGCCg -3'
miRNA:   3'- uaUGGGCUACUu-CGCUUu--GCGGU--------UGG- -5'
30733 5' -50.3 NC_006552.1 + 36071 0.66 0.951464
Target:  5'- uUGCCCuguUGGucgccaccAGcCGAAGCGCCGGCg -3'
miRNA:   3'- uAUGGGcu-ACU--------UC-GCUUUGCGGUUGg -5'
30733 5' -50.3 NC_006552.1 + 60340 0.66 0.951464
Target:  5'- gAUGCCgGAcauUGAguggccGGCGAAGgGCCAgucgcuagACCa -3'
miRNA:   3'- -UAUGGgCU---ACU------UCGCUUUgCGGU--------UGG- -5'
30733 5' -50.3 NC_006552.1 + 28979 0.66 0.946813
Target:  5'- -aACUCGgcGAAGCcuuGAGGCG-CGACCg -3'
miRNA:   3'- uaUGGGCuaCUUCG---CUUUGCgGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 25910 0.66 0.946813
Target:  5'- -cAUCCGGUGAuGCGuuggUGCCuACCa -3'
miRNA:   3'- uaUGGGCUACUuCGCuuu-GCGGuUGG- -5'
30733 5' -50.3 NC_006552.1 + 64159 0.66 0.946813
Target:  5'- -cGCCCu----GGCGcacGCGCCGACCa -3'
miRNA:   3'- uaUGGGcuacuUCGCuu-UGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 29052 0.66 0.946813
Target:  5'- -aGCCUGGcggcuccaaGAAGCGcgugcCGCCGACCa -3'
miRNA:   3'- uaUGGGCUa--------CUUCGCuuu--GCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 61415 0.66 0.941877
Target:  5'- -aACCuCGAcGAAGcCGAGACGUUcACCc -3'
miRNA:   3'- uaUGG-GCUaCUUC-GCUUUGCGGuUGG- -5'
30733 5' -50.3 NC_006552.1 + 58395 0.66 0.941877
Target:  5'- -gGCUaCGGUGAGcGCGAAGgGCagCAACCg -3'
miRNA:   3'- uaUGG-GCUACUU-CGCUUUgCG--GUUGG- -5'
30733 5' -50.3 NC_006552.1 + 34962 0.66 0.941368
Target:  5'- cUACCC-AUGAucgggaaGGCGuu-CGCCGGCUg -3'
miRNA:   3'- uAUGGGcUACU-------UCGCuuuGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 2134 0.66 0.936654
Target:  5'- --cCCUGAUGAcuucaGGCcguGGCGCUGGCCa -3'
miRNA:   3'- uauGGGCUACU-----UCGcu-UUGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 45073 0.67 0.931141
Target:  5'- --uUCCGGUGGucgGGCGAuugGUCAACCa -3'
miRNA:   3'- uauGGGCUACU---UCGCUuugCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 60135 0.67 0.927694
Target:  5'- -aACCC-AUGGuGGCGGGAgaaagugcggcagauCGCCGGCCa -3'
miRNA:   3'- uaUGGGcUACU-UCGCUUU---------------GCGGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.