miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30737 5' -56.9 NC_006552.1 + 21498 0.66 0.695654
Target:  5'- aGCGGGUagcuguaGGUCGCugCGcuGCCGCuuuGCGu -3'
miRNA:   3'- -UGUCUAg------CUAGUGugGC--CGGCGu--CGC- -5'
30737 5' -56.9 NC_006552.1 + 456 0.66 0.685032
Target:  5'- cUAGAUCGAagUC-UGCCGGC-GCAGCc -3'
miRNA:   3'- uGUCUAGCU--AGuGUGGCCGgCGUCGc -5'
30737 5' -56.9 NC_006552.1 + 60715 0.66 0.685032
Target:  5'- -aAGA-CGGUCACccGCCGaguggugaaGCCGCAGCc -3'
miRNA:   3'- ugUCUaGCUAGUG--UGGC---------CGGCGUCGc -5'
30737 5' -56.9 NC_006552.1 + 33541 0.66 0.674361
Target:  5'- cGCAGG-CG--CGCAgCGGCCGaCAGCa -3'
miRNA:   3'- -UGUCUaGCuaGUGUgGCCGGC-GUCGc -5'
30737 5' -56.9 NC_006552.1 + 33363 0.66 0.674361
Target:  5'- gACAGAagGGccagCACggGCCGGCCcuucguaggGCGGCGg -3'
miRNA:   3'- -UGUCUagCUa---GUG--UGGCCGG---------CGUCGC- -5'
30737 5' -56.9 NC_006552.1 + 19724 0.66 0.674361
Target:  5'- uCGGcGUCGGccacguUgGCGCUGGCCGCuGCGc -3'
miRNA:   3'- uGUC-UAGCU------AgUGUGGCCGGCGuCGC- -5'
30737 5' -56.9 NC_006552.1 + 61375 0.66 0.662579
Target:  5'- cCGGGccauguuUUGG-CGCGCCGGCgGCGGCu -3'
miRNA:   3'- uGUCU-------AGCUaGUGUGGCCGgCGUCGc -5'
30737 5' -56.9 NC_006552.1 + 12612 0.66 0.652915
Target:  5'- --cGAU-GAUguCGCCGGCCGUAGUc -3'
miRNA:   3'- uguCUAgCUAguGUGGCCGGCGUCGc -5'
30737 5' -56.9 NC_006552.1 + 38258 0.66 0.652915
Target:  5'- uGCGGAUCG--CGCugCGGCuCGUugAGCa -3'
miRNA:   3'- -UGUCUAGCuaGUGugGCCG-GCG--UCGc -5'
30737 5' -56.9 NC_006552.1 + 21122 0.66 0.652915
Target:  5'- uAUAGGUCGGcugcUCGCccagguugACgGGCgGCGGCGa -3'
miRNA:   3'- -UGUCUAGCU----AGUG--------UGgCCGgCGUCGC- -5'
30737 5' -56.9 NC_006552.1 + 2127 0.66 0.652915
Target:  5'- aGCAGAUCccuGAUgACuucaGGCCGUGGCGc -3'
miRNA:   3'- -UGUCUAG---CUAgUGugg-CCGGCGUCGC- -5'
30737 5' -56.9 NC_006552.1 + 19550 0.66 0.652915
Target:  5'- gACAGA------GCGCCGGCCGCuAGCu -3'
miRNA:   3'- -UGUCUagcuagUGUGGCCGGCG-UCGc -5'
30737 5' -56.9 NC_006552.1 + 35397 0.66 0.646463
Target:  5'- gGCGGuUCGGUCuuggcuuuguugaugGCAgCCugGGCCGCAGCc -3'
miRNA:   3'- -UGUCuAGCUAG---------------UGU-GG--CCGGCGUCGc -5'
30737 5' -56.9 NC_006552.1 + 48367 0.66 0.642159
Target:  5'- -gAGGUCGAUU--ACCGGUuccauCGCGGCGc -3'
miRNA:   3'- ugUCUAGCUAGugUGGCCG-----GCGUCGC- -5'
30737 5' -56.9 NC_006552.1 + 15411 0.66 0.642159
Target:  5'- uCAGGUUGGUCGCuuucgccUCGGUCGCAGa- -3'
miRNA:   3'- uGUCUAGCUAGUGu------GGCCGGCGUCgc -5'
30737 5' -56.9 NC_006552.1 + 57015 0.66 0.642159
Target:  5'- uGCuGAUgGAgcaUCACgACCGGCCG-AGCa -3'
miRNA:   3'- -UGuCUAgCU---AGUG-UGGCCGGCgUCGc -5'
30737 5' -56.9 NC_006552.1 + 61683 0.67 0.631395
Target:  5'- cACGGAccuggccgcUCGAcCACGCCGGCauccucacCGCGcGCGg -3'
miRNA:   3'- -UGUCU---------AGCUaGUGUGGCCG--------GCGU-CGC- -5'
30737 5' -56.9 NC_006552.1 + 5114 0.67 0.620632
Target:  5'- cGCGGG-CGGUCAUugCGGCaccuGCAcgGCGa -3'
miRNA:   3'- -UGUCUaGCUAGUGugGCCGg---CGU--CGC- -5'
30737 5' -56.9 NC_006552.1 + 61877 0.67 0.588434
Target:  5'- cCAGGcUGaAUUGCGCCGGCUGCGGaCGc -3'
miRNA:   3'- uGUCUaGC-UAGUGUGGCCGGCGUC-GC- -5'
30737 5' -56.9 NC_006552.1 + 24247 0.67 0.588434
Target:  5'- gGCGGAacgcaUCGGUUgugguCGCCGGCacuaccgGCAGCGg -3'
miRNA:   3'- -UGUCU-----AGCUAGu----GUGGCCGg------CGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.