miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30747 3' -61.6 NC_006552.1 + 829 0.66 0.458299
Target:  5'- gGCCGGGUauaggucauuguccaGuacucuGCGCGCCuGGUUUGcGCUGCc -3'
miRNA:   3'- -CGGUCCG---------------U------CGCGCGG-UCAAGC-CGGCG- -5'
30747 3' -61.6 NC_006552.1 + 55928 0.66 0.454532
Target:  5'- cGCCGgagaucccGGCGGacaaGCGCaccuucaacCAGUUCcGCCGCu -3'
miRNA:   3'- -CGGU--------CCGUCg---CGCG---------GUCAAGcCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 50303 0.66 0.454532
Target:  5'- cGCCGGGCgcucaccgaAGuUGCGUCGGcaaUCGGCgUGCu -3'
miRNA:   3'- -CGGUCCG---------UC-GCGCGGUCa--AGCCG-GCG- -5'
30747 3' -61.6 NC_006552.1 + 31901 0.66 0.445188
Target:  5'- gGCCAGcGCGGCGCG---GUUCGGaUCGa -3'
miRNA:   3'- -CGGUC-CGUCGCGCgguCAAGCC-GGCg -5'
30747 3' -61.6 NC_006552.1 + 30581 0.66 0.445188
Target:  5'- cGCCGGgauugguaGCAGCGuCGCacuaucauCGGUacUCGGCCaGCu -3'
miRNA:   3'- -CGGUC--------CGUCGC-GCG--------GUCA--AGCCGG-CG- -5'
30747 3' -61.6 NC_006552.1 + 12388 0.66 0.442406
Target:  5'- gGCCugcgcgucGGCGGUGuCGCCugucaccagcuuacGGaaugcUUCGGCCGCc -3'
miRNA:   3'- -CGGu-------CCGUCGC-GCGG--------------UC-----AAGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 4941 0.66 0.435953
Target:  5'- uGUCGcGCuGCGCgGUCAGcUCGGCCaGCu -3'
miRNA:   3'- -CGGUcCGuCGCG-CGGUCaAGCCGG-CG- -5'
30747 3' -61.6 NC_006552.1 + 15112 0.66 0.426829
Target:  5'- cGCCAGGUucgccucgaacuGGCGCGCguugaacUCGucGCCGCg -3'
miRNA:   3'- -CGGUCCG------------UCGCGCGguca---AGC--CGGCG- -5'
30747 3' -61.6 NC_006552.1 + 62141 0.66 0.426829
Target:  5'- cGCCaAGGUGGC-CGaCCAGaUCcuGCCGCa -3'
miRNA:   3'- -CGG-UCCGUCGcGC-GGUCaAGc-CGGCG- -5'
30747 3' -61.6 NC_006552.1 + 13302 0.66 0.41782
Target:  5'- aUCGGGCuugGGUGCcucuGCCGGUUCGGaCUGg -3'
miRNA:   3'- cGGUCCG---UCGCG----CGGUCAAGCC-GGCg -5'
30747 3' -61.6 NC_006552.1 + 26262 0.66 0.41782
Target:  5'- uCC-GGUAGCGuCGgCAGgaugaccgUGGCCGCg -3'
miRNA:   3'- cGGuCCGUCGC-GCgGUCaa------GCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 44054 0.66 0.416925
Target:  5'- uCCAGGUagaucggccgcccGGCGCGCUuccucUUCGccGCCGCg -3'
miRNA:   3'- cGGUCCG-------------UCGCGCGGuc---AAGC--CGGCG- -5'
30747 3' -61.6 NC_006552.1 + 41979 0.66 0.41247
Target:  5'- aGCCGuggcaguaccGGCAGCaaccgaugcguaacuGCGUCAGUUCGcgugcaucuGCCGUc -3'
miRNA:   3'- -CGGU----------CCGUCG---------------CGCGGUCAAGC---------CGGCG- -5'
30747 3' -61.6 NC_006552.1 + 63795 0.66 0.408927
Target:  5'- cGCCAucacCGGUGCGCUAGcUUCGG-CGCc -3'
miRNA:   3'- -CGGUcc--GUCGCGCGGUC-AAGCCgGCG- -5'
30747 3' -61.6 NC_006552.1 + 65014 0.66 0.408927
Target:  5'- cCCAa--AGgGCGCaAGUUUGGCCGCg -3'
miRNA:   3'- cGGUccgUCgCGCGgUCAAGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 34366 0.66 0.408927
Target:  5'- uGCUuGGCGuucgacgcGCGCGCCAGUgcagCaGCCuGCc -3'
miRNA:   3'- -CGGuCCGU--------CGCGCGGUCAa---GcCGG-CG- -5'
30747 3' -61.6 NC_006552.1 + 58407 0.67 0.400153
Target:  5'- cGCgaaGGGCAGCaaccgcgaGUGCCAGgccUCGaucaGCCGCu -3'
miRNA:   3'- -CGg--UCCGUCG--------CGCGGUCa--AGC----CGGCG- -5'
30747 3' -61.6 NC_006552.1 + 38365 0.67 0.400153
Target:  5'- uGCCAGcaGCAGUuCGCCcaccagGGUcCGGCCGg -3'
miRNA:   3'- -CGGUC--CGUCGcGCGG------UCAaGCCGGCg -5'
30747 3' -61.6 NC_006552.1 + 21148 0.67 0.400153
Target:  5'- -aCGGGCGGCgGCGacgcgaUAGgcgcaucCGGCCGCg -3'
miRNA:   3'- cgGUCCGUCG-CGCg-----GUCaa-----GCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 4250 0.67 0.397545
Target:  5'- cCCAGGCAG-GCGCaUAGUUucccgcuuuggcggUGGuuGCg -3'
miRNA:   3'- cGGUCCGUCgCGCG-GUCAA--------------GCCggCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.