miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30772 5' -57.2 NC_006552.1 + 26565 0.66 0.687335
Target:  5'- gCCUGcGCgCCAUCguaggugaAGAUGcCCGCCGuUCCg -3'
miRNA:   3'- -GGAC-CG-GGUGGg-------UUUAC-GGCGGU-AGG- -5'
30772 5' -57.2 NC_006552.1 + 22858 0.66 0.687335
Target:  5'- --cGGCCCACa--GAUGCCcGUgaCAUCCa -3'
miRNA:   3'- ggaCCGGGUGgguUUACGG-CG--GUAGG- -5'
30772 5' -57.2 NC_006552.1 + 21168 0.66 0.687335
Target:  5'- --aGGCgCAUCCGgccgcgucGGUGCCGgCaCAUCCg -3'
miRNA:   3'- ggaCCGgGUGGGU--------UUACGGC-G-GUAGG- -5'
30772 5' -57.2 NC_006552.1 + 62047 0.66 0.676727
Target:  5'- gCUGGaCCUgcuACCCGGAgacUGCCGgguucgaCAUCCu -3'
miRNA:   3'- gGACC-GGG---UGGGUUU---ACGGCg------GUAGG- -5'
30772 5' -57.2 NC_006552.1 + 13635 0.66 0.666078
Target:  5'- aCgGGCCUGCUCGgcggccuggcGAucUGCCGCCuuuUCCu -3'
miRNA:   3'- gGaCCGGGUGGGU----------UU--ACGGCGGu--AGG- -5'
30772 5' -57.2 NC_006552.1 + 39119 0.66 0.663945
Target:  5'- uCCaGGCCCGCgCCucguuccaugcauuGugcaguccgguggacGUGCCGCCuUCCa -3'
miRNA:   3'- -GGaCCGGGUG-GGu-------------U---------------UACGGCGGuAGG- -5'
30772 5' -57.2 NC_006552.1 + 29801 0.66 0.655399
Target:  5'- --aGGUUCGCCgGcggGCCGCCAcCCa -3'
miRNA:   3'- ggaCCGGGUGGgUuuaCGGCGGUaGG- -5'
30772 5' -57.2 NC_006552.1 + 14520 0.66 0.655399
Target:  5'- aCCUcuucGCCgUugUCGcggGCCGCCAUCCa -3'
miRNA:   3'- -GGAc---CGG-GugGGUuuaCGGCGGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 59738 0.66 0.65433
Target:  5'- uCCUGGCCCgcugcuacgaacuGCUCGAGUacggcgGCCG-CAUCg -3'
miRNA:   3'- -GGACCGGG-------------UGGGUUUA------CGGCgGUAGg -5'
30772 5' -57.2 NC_006552.1 + 40618 0.66 0.6447
Target:  5'- -aUGcGCUCGCCCA--UGUCGCgCAUCa -3'
miRNA:   3'- ggAC-CGGGUGGGUuuACGGCG-GUAGg -5'
30772 5' -57.2 NC_006552.1 + 969 0.66 0.63399
Target:  5'- uCC-GGUCCGCUC-GAUGCUGCCc-CCg -3'
miRNA:   3'- -GGaCCGGGUGGGuUUACGGCGGuaGG- -5'
30772 5' -57.2 NC_006552.1 + 52942 0.66 0.63399
Target:  5'- gCCUGcGCCggCGCCCGccgccGGUGCgG-CAUCCg -3'
miRNA:   3'- -GGAC-CGG--GUGGGU-----UUACGgCgGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 12669 0.67 0.623278
Target:  5'- cCUUGGCCUGCUCAcgcagggccuuGGUGCUcucaGCC-UCCa -3'
miRNA:   3'- -GGACCGGGUGGGU-----------UUACGG----CGGuAGG- -5'
30772 5' -57.2 NC_006552.1 + 26997 0.67 0.623278
Target:  5'- aCCUGGCCgCACauugg-GCaCGCCcacAUCCa -3'
miRNA:   3'- -GGACCGG-GUGgguuuaCG-GCGG---UAGG- -5'
30772 5' -57.2 NC_006552.1 + 43260 0.67 0.623278
Target:  5'- gCUGGCUCACgC---UGCCGCCc-CCu -3'
miRNA:   3'- gGACCGGGUGgGuuuACGGCGGuaGG- -5'
30772 5' -57.2 NC_006552.1 + 32396 0.67 0.616854
Target:  5'- uCCUGGUCCGaCCAGAaauacggcuccaccaUGUCGUucgCGUCCg -3'
miRNA:   3'- -GGACCGGGUgGGUUU---------------ACGGCG---GUAGG- -5'
30772 5' -57.2 NC_006552.1 + 28125 0.67 0.612574
Target:  5'- gCCUGGCCgAacaaCUgcAUGUuacUGCCGUCCg -3'
miRNA:   3'- -GGACCGGgUg---GGuuUACG---GCGGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 9466 0.67 0.601886
Target:  5'- cCCaGGCCCAuCCCAug-GgCGagCAUCCa -3'
miRNA:   3'- -GGaCCGGGU-GGGUuuaCgGCg-GUAGG- -5'
30772 5' -57.2 NC_006552.1 + 14868 0.67 0.601886
Target:  5'- --aGGCUCG-CCAGGUGCUGCCGgaUCg -3'
miRNA:   3'- ggaCCGGGUgGGUUUACGGCGGU--AGg -5'
30772 5' -57.2 NC_006552.1 + 21875 0.67 0.601886
Target:  5'- -aUGGUCCAgcaCCAgcgcggcaaugGAUGCC-CCGUCCa -3'
miRNA:   3'- ggACCGGGUg--GGU-----------UUACGGcGGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.