miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3079 3' -63.9 NC_001493.1 + 90182 0.66 0.572992
Target:  5'- cAUCGGUgUGGUCGGaCCGUucaaccaguGGGugGAc -3'
miRNA:   3'- aUGGCCA-GCCAGCCgGGCG---------CCCugCU- -5'
3079 3' -63.9 NC_001493.1 + 61381 0.66 0.572033
Target:  5'- gGCCGGUgCGGcgaaggguagcgUCGGUUguuucagCGCGGGGCGc -3'
miRNA:   3'- aUGGCCA-GCC------------AGCCGG-------GCGCCCUGCu -5'
3079 3' -63.9 NC_001493.1 + 39368 0.66 0.553894
Target:  5'- cUACCGG-CGGUCGuuCC-CGGGuCGGg -3'
miRNA:   3'- -AUGGCCaGCCAGCcgGGcGCCCuGCU- -5'
3079 3' -63.9 NC_001493.1 + 63318 0.66 0.552944
Target:  5'- cACgGuGUCGGUCGauCCCGCGGGcuucgugacauucGCGGu -3'
miRNA:   3'- aUGgC-CAGCCAGCc-GGGCGCCC-------------UGCU- -5'
3079 3' -63.9 NC_001493.1 + 30486 0.66 0.53499
Target:  5'- -cCUGGUCGGggggaUCGGgUCGgaCGGGGCGAu -3'
miRNA:   3'- auGGCCAGCC-----AGCCgGGC--GCCCUGCU- -5'
3079 3' -63.9 NC_001493.1 + 27515 0.66 0.522825
Target:  5'- aUGCCGGgCGGcCGGCCucuuuccucguacaCGCGGGGu-- -3'
miRNA:   3'- -AUGGCCaGCCaGCCGG--------------GCGCCCUgcu -5'
3079 3' -63.9 NC_001493.1 + 124064 0.66 0.522825
Target:  5'- --aCGGUCGGgcgagacgcgCGGCCCcuccacgguucgaaGCGGGcACGGc -3'
miRNA:   3'- augGCCAGCCa---------GCCGGG--------------CGCCC-UGCU- -5'
3079 3' -63.9 NC_001493.1 + 23851 0.66 0.516318
Target:  5'- aUACUGGUCGGUCaugauCCCGCccGGGAUc- -3'
miRNA:   3'- -AUGGCCAGCCAGcc---GGGCG--CCCUGcu -5'
3079 3' -63.9 NC_001493.1 + 63261 0.66 0.516318
Target:  5'- cACCGG-CGau--GCCCGCGGGAgCGAa -3'
miRNA:   3'- aUGGCCaGCcagcCGGGCGCCCU-GCU- -5'
3079 3' -63.9 NC_001493.1 + 63306 0.66 0.516318
Target:  5'- cACCGG-CGaa--GCCCGCGGGAgCGAa -3'
miRNA:   3'- aUGGCCaGCcagcCGGGCGCCCU-GCU- -5'
3079 3' -63.9 NC_001493.1 + 8509 0.66 0.515392
Target:  5'- --aCGGUCGGgcgagacgcgCGGCCCcuccacguucgaaGCGGGcACGGc -3'
miRNA:   3'- augGCCAGCCa---------GCCGGG-------------CGCCC-UGCU- -5'
3079 3' -63.9 NC_001493.1 + 47905 0.67 0.507081
Target:  5'- aGCUcG-CGGUCGGaCCCGCGGGuCu- -3'
miRNA:   3'- aUGGcCaGCCAGCC-GGGCGCCCuGcu -5'
3079 3' -63.9 NC_001493.1 + 63522 0.67 0.497002
Target:  5'- cACgGuGUCGGUCGcuCCCGCGGGcaucgugacauucGCGGu -3'
miRNA:   3'- aUGgC-CAGCCAGCc-GGGCGCCC-------------UGCU- -5'
3079 3' -63.9 NC_001493.1 + 63399 0.67 0.497002
Target:  5'- cACgGuGUCGGUCGcuCCCGCGGGcaucgugacauucGCGGu -3'
miRNA:   3'- aUGgC-CAGCCAGCc-GGGCGCCC-------------UGCU- -5'
3079 3' -63.9 NC_001493.1 + 5087 0.67 0.488822
Target:  5'- cAUCGGUcCGGUCGGUaucggUGCGGuuGACGAu -3'
miRNA:   3'- aUGGCCA-GCCAGCCGg----GCGCC--CUGCU- -5'
3079 3' -63.9 NC_001493.1 + 120642 0.67 0.488822
Target:  5'- cAUCGGUcCGGUCGGUaucggUGCGGuuGACGAu -3'
miRNA:   3'- aUGGCCA-GCCAGCCGg----GCGCC--CUGCU- -5'
3079 3' -63.9 NC_001493.1 + 22410 0.67 0.479809
Target:  5'- -uCCGGaccuacCGG-CGGCCCGCGuGAUGAg -3'
miRNA:   3'- auGGCCa-----GCCaGCCGGGCGCcCUGCU- -5'
3079 3' -63.9 NC_001493.1 + 88461 0.67 0.479809
Target:  5'- uUACCGGUCGGUaCGGaggCgGaCGGGGUGAu -3'
miRNA:   3'- -AUGGCCAGCCA-GCCg--GgC-GCCCUGCU- -5'
3079 3' -63.9 NC_001493.1 + 131811 0.67 0.462032
Target:  5'- -cUCGaG-CGGUCGaGCCC-CGGGACGGc -3'
miRNA:   3'- auGGC-CaGCCAGC-CGGGcGCCCUGCU- -5'
3079 3' -63.9 NC_001493.1 + 59786 0.67 0.462032
Target:  5'- gGCCGGcCGGUaacggaGGCCCGauuGACGAc -3'
miRNA:   3'- aUGGCCaGCCAg-----CCGGGCgccCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.