miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30815 5' -54 NC_006552.1 + 52725 0.66 0.863061
Target:  5'- cGGCCAaGAaCAGUACUAC--CGcACGCg -3'
miRNA:   3'- -CCGGUaCUgGUCAUGGUGcaGC-UGCG- -5'
30815 5' -54 NC_006552.1 + 839 0.66 0.863061
Target:  5'- aGGUCAuUGuCCAGUacucugcgcGCCugGUUuGCGCu -3'
miRNA:   3'- -CCGGU-ACuGGUCA---------UGGugCAGcUGCG- -5'
30815 5' -54 NC_006552.1 + 41408 0.66 0.846568
Target:  5'- aGCCAggcagcgcGCCAGUucgGCCGCGUcCGugGg -3'
miRNA:   3'- cCGGUac------UGGUCA---UGGUGCA-GCugCg -5'
30815 5' -54 NC_006552.1 + 39489 0.66 0.846568
Target:  5'- uGCCGUGuucaGCCGGUAgUucagaGCGUCGGCa- -3'
miRNA:   3'- cCGGUAC----UGGUCAUgG-----UGCAGCUGcg -5'
30815 5' -54 NC_006552.1 + 35843 0.66 0.846568
Target:  5'- aGCCGccGCCAGUugguuguccuGCgACGUCGGgGCc -3'
miRNA:   3'- cCGGUacUGGUCA----------UGgUGCAGCUgCG- -5'
30815 5' -54 NC_006552.1 + 8876 0.66 0.841447
Target:  5'- aGGCCAgaccGACUgaacaaaauguccggGGUACuCGCGUCGAagGUa -3'
miRNA:   3'- -CCGGUa---CUGG---------------UCAUG-GUGCAGCUg-CG- -5'
30815 5' -54 NC_006552.1 + 8119 0.66 0.837991
Target:  5'- cGGCCAUGcAUCAGccaucugcGCCAgGUgGuCGCg -3'
miRNA:   3'- -CCGGUAC-UGGUCa-------UGGUgCAgCuGCG- -5'
30815 5' -54 NC_006552.1 + 31883 0.66 0.837991
Target:  5'- aGCCGUGAaagCGGcuucgGCCAgCG-CGGCGCg -3'
miRNA:   3'- cCGGUACUg--GUCa----UGGU-GCaGCUGCG- -5'
30815 5' -54 NC_006552.1 + 23023 0.66 0.837991
Target:  5'- uGCCccauCCAGUGCCAgaUGUCGuCGUa -3'
miRNA:   3'- cCGGuacuGGUCAUGGU--GCAGCuGCG- -5'
30815 5' -54 NC_006552.1 + 47819 0.66 0.837991
Target:  5'- aGGCCAguccgugauccUGACCA--ACC-CG-CGugGCg -3'
miRNA:   3'- -CCGGU-----------ACUGGUcaUGGuGCaGCugCG- -5'
30815 5' -54 NC_006552.1 + 58928 0.66 0.829203
Target:  5'- cGCCuuguaacGGCCAGccuUGCCACGUugCGGCGg -3'
miRNA:   3'- cCGGua-----CUGGUC---AUGGUGCA--GCUGCg -5'
30815 5' -54 NC_006552.1 + 34922 0.66 0.829203
Target:  5'- uGCCAaucucaGGCCAGUGCCcuuGCccUCGGCGUa -3'
miRNA:   3'- cCGGUa-----CUGGUCAUGG---UGc-AGCUGCG- -5'
30815 5' -54 NC_006552.1 + 55315 0.66 0.829203
Target:  5'- cGGCUGgcucGGCgAGUACCugGaaggCGACcGCg -3'
miRNA:   3'- -CCGGUa---CUGgUCAUGGugCa---GCUG-CG- -5'
30815 5' -54 NC_006552.1 + 49853 0.66 0.829203
Target:  5'- cGCCAccGGCUcgacGCCGCGUCgGACGCc -3'
miRNA:   3'- cCGGUa-CUGGuca-UGGUGCAG-CUGCG- -5'
30815 5' -54 NC_006552.1 + 45354 0.66 0.829203
Target:  5'- gGGCCuggcaugucGGCCGGUAUCugG-CaGCGCg -3'
miRNA:   3'- -CCGGua-------CUGGUCAUGGugCaGcUGCG- -5'
30815 5' -54 NC_006552.1 + 38953 0.67 0.820215
Target:  5'- cGGCCGgacGCCAGcGCgAUGUUGuGCGCc -3'
miRNA:   3'- -CCGGUac-UGGUCaUGgUGCAGC-UGCG- -5'
30815 5' -54 NC_006552.1 + 53298 0.67 0.820215
Target:  5'- cGGCCGcGcaGCCc--GCCGCG-CGGCGCa -3'
miRNA:   3'- -CCGGUaC--UGGucaUGGUGCaGCUGCG- -5'
30815 5' -54 NC_006552.1 + 34322 0.67 0.811035
Target:  5'- gGGUguUGGaccaCAGgcCCGCaUCGACGCg -3'
miRNA:   3'- -CCGguACUg---GUCauGGUGcAGCUGCG- -5'
30815 5' -54 NC_006552.1 + 27847 0.67 0.811035
Target:  5'- aGGCCGUaGCCGuccaccuuGaUGCCgGCGUCGAUGUu -3'
miRNA:   3'- -CCGGUAcUGGU--------C-AUGG-UGCAGCUGCG- -5'
30815 5' -54 NC_006552.1 + 43319 0.67 0.810107
Target:  5'- aGGUCcgGACCAaagcccuacgcauGUACCAC-UCGACc- -3'
miRNA:   3'- -CCGGuaCUGGU-------------CAUGGUGcAGCUGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.