miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30823 3' -57.2 NC_006552.1 + 45425 0.66 0.681799
Target:  5'- --cGggGCCGGcGCAGC-CuccCCGGCa -3'
miRNA:   3'- cuuCuuCGGCC-UGUCGuGccaGGCCG- -5'
30823 3' -57.2 NC_006552.1 + 55153 0.66 0.671146
Target:  5'- cAAGAAGCCcGACGGCACcccGaCCGuGCu -3'
miRNA:   3'- cUUCUUCGGcCUGUCGUGc--CaGGC-CG- -5'
30823 3' -57.2 NC_006552.1 + 47688 0.66 0.671146
Target:  5'- cGAGAaagcauucgcccAGCCGGAggUGGCGCGuaacgCCGGCc -3'
miRNA:   3'- cUUCU------------UCGGCCU--GUCGUGCca---GGCCG- -5'
30823 3' -57.2 NC_006552.1 + 20853 0.66 0.656175
Target:  5'- cGggGAacacgaauuccggcAGUCGGAucuguucCAGCGCuuccauGUCCGGCa -3'
miRNA:   3'- -CuuCU--------------UCGGCCU-------GUCGUGc-----CAGGCCG- -5'
30823 3' -57.2 NC_006552.1 + 13333 0.66 0.649744
Target:  5'- --uGggGCCGGGCuGCAUcc-UCGGCa -3'
miRNA:   3'- cuuCuuCGGCCUGuCGUGccaGGCCG- -5'
30823 3' -57.2 NC_006552.1 + 31975 0.66 0.649744
Target:  5'- -cAGAuGCCGGugGuGCuCGGcgugaaucUCCGGCu -3'
miRNA:   3'- cuUCUuCGGCCugU-CGuGCC--------AGGCCG- -5'
30823 3' -57.2 NC_006552.1 + 15591 0.66 0.639015
Target:  5'- gGgcGAAGCCGcg-AGCACGGg-CGGCu -3'
miRNA:   3'- -CuuCUUCGGCcugUCGUGCCagGCCG- -5'
30823 3' -57.2 NC_006552.1 + 11746 0.67 0.617549
Target:  5'- --uGAGGCCGGAgCGGCGaaUGGcacgCuCGGCa -3'
miRNA:   3'- cuuCUUCGGCCU-GUCGU--GCCa---G-GCCG- -5'
30823 3' -57.2 NC_006552.1 + 53591 0.67 0.596131
Target:  5'- --uGgcGCCGGcCAGUuCGGUgccgCCGGCu -3'
miRNA:   3'- cuuCuuCGGCCuGUCGuGCCA----GGCCG- -5'
30823 3' -57.2 NC_006552.1 + 13281 0.67 0.585462
Target:  5'- --cGAAucGCUGGGCuGCGCGGgaUCgGGCu -3'
miRNA:   3'- cuuCUU--CGGCCUGuCGUGCC--AGgCCG- -5'
30823 3' -57.2 NC_006552.1 + 33365 0.67 0.57483
Target:  5'- -cAGAAG--GGcCAGCACGGgCCGGCc -3'
miRNA:   3'- cuUCUUCggCCuGUCGUGCCaGGCCG- -5'
30823 3' -57.2 NC_006552.1 + 10789 0.67 0.57483
Target:  5'- --uGgcGCC-GACGGCAuUGcGUCCGGCg -3'
miRNA:   3'- cuuCuuCGGcCUGUCGU-GC-CAGGCCG- -5'
30823 3' -57.2 NC_006552.1 + 17594 0.67 0.57483
Target:  5'- --cGAugcGCUGGGCGGCGCGgGUuuGGa -3'
miRNA:   3'- cuuCUu--CGGCCUGUCGUGC-CAggCCg -5'
30823 3' -57.2 NC_006552.1 + 12216 0.68 0.553707
Target:  5'- -cAGAGGCCu--CAGCGCGGg-CGGCc -3'
miRNA:   3'- cuUCUUCGGccuGUCGUGCCagGCCG- -5'
30823 3' -57.2 NC_006552.1 + 31876 0.68 0.550557
Target:  5'- cGAAGuAAGCCgugaaagcggcuucGGccagcGCGGCGCGGUUCGGa -3'
miRNA:   3'- -CUUC-UUCGG--------------CC-----UGUCGUGCCAGGCCg -5'
30823 3' -57.2 NC_006552.1 + 61648 0.68 0.547414
Target:  5'- cGAGGccgccGGCCGGACGuccaaccuggccgccGCACGGaCCuGGCc -3'
miRNA:   3'- -CUUCu----UCGGCCUGU---------------CGUGCCaGG-CCG- -5'
30823 3' -57.2 NC_006552.1 + 20790 0.68 0.522482
Target:  5'- uGAAGAcGuuGGGCAccgugaucccGCuCGcGUCCGGCg -3'
miRNA:   3'- -CUUCUuCggCCUGU----------CGuGC-CAGGCCG- -5'
30823 3' -57.2 NC_006552.1 + 38386 0.68 0.521453
Target:  5'- -cAGGGuCCGGcCGGCGCGGaaguuguccaugaUCCGGCc -3'
miRNA:   3'- cuUCUUcGGCCuGUCGUGCC-------------AGGCCG- -5'
30823 3' -57.2 NC_006552.1 + 25790 0.68 0.512223
Target:  5'- -cAGAGGuaCCGGcACGGC-CGGUgaugCCGGCg -3'
miRNA:   3'- cuUCUUC--GGCC-UGUCGuGCCA----GGCCG- -5'
30823 3' -57.2 NC_006552.1 + 61270 0.69 0.48197
Target:  5'- aGGGAAGCUGGGCcGCAaacccaugGGUCUGGg -3'
miRNA:   3'- cUUCUUCGGCCUGuCGUg-------CCAGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.