miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30870 3' -60.1 NC_006552.1 + 29078 0.66 0.513755
Target:  5'- cCGCCGAC--CAUaGGUCUGGCcacGGCAu -3'
miRNA:   3'- aGCGGCUGaaGUGgUCGGACCG---CCGU- -5'
30870 3' -60.1 NC_006552.1 + 35106 0.66 0.513755
Target:  5'- cCGCuCGGCaUCuuGCCGGUCaGGCGGUu -3'
miRNA:   3'- aGCG-GCUGaAG--UGGUCGGaCCGCCGu -5'
30870 3' -60.1 NC_006552.1 + 4843 0.66 0.513755
Target:  5'- gUCGCgCaGC-UCACCAGCaaGGCGaGCGa -3'
miRNA:   3'- -AGCG-GcUGaAGUGGUCGgaCCGC-CGU- -5'
30870 3' -60.1 NC_006552.1 + 2627 0.66 0.503686
Target:  5'- -aGCCGAUUcgAUgGGgCUGGCGGCc -3'
miRNA:   3'- agCGGCUGAagUGgUCgGACCGCCGu -5'
30870 3' -60.1 NC_006552.1 + 12155 0.66 0.502684
Target:  5'- cCGCCcucGAUggCAUCGGCCagguuguucauggUGGCGGCc -3'
miRNA:   3'- aGCGG---CUGaaGUGGUCGG-------------ACCGCCGu -5'
30870 3' -60.1 NC_006552.1 + 35869 0.66 0.493704
Target:  5'- aCGUCGggGCcUCGCCuGCCgUGGCGcGCGc -3'
miRNA:   3'- aGCGGC--UGaAGUGGuCGG-ACCGC-CGU- -5'
30870 3' -60.1 NC_006552.1 + 31401 0.66 0.483813
Target:  5'- cCGUCGGCggCGCC-GCCagUGGUGGUc -3'
miRNA:   3'- aGCGGCUGaaGUGGuCGG--ACCGCCGu -5'
30870 3' -60.1 NC_006552.1 + 12619 0.66 0.483813
Target:  5'- gUCGCCGGCcguagUCugcCCGGCgCUGGCuacGCGg -3'
miRNA:   3'- -AGCGGCUGa----AGu--GGUCG-GACCGc--CGU- -5'
30870 3' -60.1 NC_006552.1 + 5592 0.66 0.482829
Target:  5'- gCGCCGAa---GCCGGCCaGGCugacggucagcgcGGCAa -3'
miRNA:   3'- aGCGGCUgaagUGGUCGGaCCG-------------CCGU- -5'
30870 3' -60.1 NC_006552.1 + 21126 0.66 0.474019
Target:  5'- -gGUCGGCUgcUCGCCcaGGUUgacgGGCGGCGg -3'
miRNA:   3'- agCGGCUGA--AGUGG--UCGGa---CCGCCGU- -5'
30870 3' -60.1 NC_006552.1 + 52175 0.67 0.454735
Target:  5'- aUCGCCGcCaUCGCCgaaGGCCUGGCc--- -3'
miRNA:   3'- -AGCGGCuGaAGUGG---UCGGACCGccgu -5'
30870 3' -60.1 NC_006552.1 + 57129 0.67 0.454735
Target:  5'- aCGaacuggaCGACaaccagCACCGGgaCCUGGCGGCGu -3'
miRNA:   3'- aGCg------GCUGaa----GUGGUC--GGACCGCCGU- -5'
30870 3' -60.1 NC_006552.1 + 1170 0.67 0.449033
Target:  5'- gUCGgCGaggguguagucuuuaGCUUCugCuuuuGCCUGGCGGaCAg -3'
miRNA:   3'- -AGCgGC---------------UGAAGugGu---CGGACCGCC-GU- -5'
30870 3' -60.1 NC_006552.1 + 57394 0.67 0.445253
Target:  5'- cCGCuCGACUUCAaaacccaguaCGGCCUGGCccuGGaCGa -3'
miRNA:   3'- aGCG-GCUGAAGUg---------GUCGGACCG---CC-GU- -5'
30870 3' -60.1 NC_006552.1 + 5421 0.67 0.445253
Target:  5'- uUCGCCaucaGGCUgcgCGCCAGUuguucgccgcgCUGGCGGg- -3'
miRNA:   3'- -AGCGG----CUGAa--GUGGUCG-----------GACCGCCgu -5'
30870 3' -60.1 NC_006552.1 + 12950 0.67 0.445253
Target:  5'- gCGCUGGCcUU---GGCCUGGCGGUg -3'
miRNA:   3'- aGCGGCUGaAGuggUCGGACCGCCGu -5'
30870 3' -60.1 NC_006552.1 + 16778 0.67 0.417491
Target:  5'- cCGCCc-CUUCGCCAGCCgcgcCGGCu -3'
miRNA:   3'- aGCGGcuGAAGUGGUCGGacc-GCCGu -5'
30870 3' -60.1 NC_006552.1 + 26729 0.67 0.417491
Target:  5'- gUCGCCGugcaguggGCUUUGCCAGagUUGGCGGa- -3'
miRNA:   3'- -AGCGGC--------UGAAGUGGUCg-GACCGCCgu -5'
30870 3' -60.1 NC_006552.1 + 22012 0.67 0.41387
Target:  5'- aUCGCUGACgguggcggcguccUCgACCAGgacaCUGGCGGCc -3'
miRNA:   3'- -AGCGGCUGa------------AG-UGGUCg---GACCGCCGu -5'
30870 3' -60.1 NC_006552.1 + 29474 0.67 0.408474
Target:  5'- gUGCUGuACUUC-CaAGCCuUGGCGGCGc -3'
miRNA:   3'- aGCGGC-UGAAGuGgUCGG-ACCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.