miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30877 3' -59.7 NC_006552.1 + 54283 0.66 0.56614
Target:  5'- aCCAccuaCGGCuucg---CGCCGCCGGUCg -3'
miRNA:   3'- -GGUa---GCCGuacggaaGCGGCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 52946 0.66 0.56614
Target:  5'- gCGcCGGC--GCC--CGCCGCCGGUg -3'
miRNA:   3'- gGUaGCCGuaCGGaaGCGGCGGCCGg -5'
30877 3' -59.7 NC_006552.1 + 28610 0.66 0.56614
Target:  5'- -gAUCGGCGgcgguucgaUGCCUUCcaGCgGCagguaacggCGGCCg -3'
miRNA:   3'- ggUAGCCGU---------ACGGAAG--CGgCG---------GCCGG- -5'
30877 3' -59.7 NC_006552.1 + 48091 0.66 0.563044
Target:  5'- cCUAUUGGCAUccgGCUUUCGaaGCUgagacccaagaggaGGCCa -3'
miRNA:   3'- -GGUAGCCGUA---CGGAAGCggCGG--------------CCGG- -5'
30877 3' -59.7 NC_006552.1 + 15342 0.66 0.55584
Target:  5'- gCA-CGGCcUGCag-CGCCGCaGGCUg -3'
miRNA:   3'- gGUaGCCGuACGgaaGCGGCGgCCGG- -5'
30877 3' -59.7 NC_006552.1 + 52172 0.66 0.55584
Target:  5'- cUCAUCGcc--GCCaUCGCCGaaGGCCu -3'
miRNA:   3'- -GGUAGCcguaCGGaAGCGGCggCCGG- -5'
30877 3' -59.7 NC_006552.1 + 59665 0.66 0.55584
Target:  5'- aCCGUUcGCcUGCCU----CGCCGGCCa -3'
miRNA:   3'- -GGUAGcCGuACGGAagcgGCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 4905 0.66 0.545595
Target:  5'- -gGUCGGCAgcgGCCUUauugagCGCUGCCuGUUu -3'
miRNA:   3'- ggUAGCCGUa--CGGAA------GCGGCGGcCGG- -5'
30877 3' -59.7 NC_006552.1 + 13674 0.66 0.545595
Target:  5'- cUCGUCGGUAcggGCgUccagUGCCGCCuGGCg -3'
miRNA:   3'- -GGUAGCCGUa--CGgAa---GCGGCGG-CCGg -5'
30877 3' -59.7 NC_006552.1 + 38121 0.66 0.53846
Target:  5'- gCggCGGCAUGCuCUugacggccucagacaUCGCguugagcUGCUGGCCg -3'
miRNA:   3'- gGuaGCCGUACG-GA---------------AGCG-------GCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 3571 0.66 0.535411
Target:  5'- gCCA--GGUgcugGCCga-GCCGCCGGCg -3'
miRNA:   3'- -GGUagCCGua--CGGaagCGGCGGCCGg -5'
30877 3' -59.7 NC_006552.1 + 20694 0.66 0.535411
Target:  5'- gCGcCGGCAguCCUgUGCCGCCcGCCa -3'
miRNA:   3'- gGUaGCCGUacGGAaGCGGCGGcCGG- -5'
30877 3' -59.7 NC_006552.1 + 44982 0.66 0.535411
Target:  5'- gCAUgGGCA-GCCcuccUCGCUcucuGCuCGGCCa -3'
miRNA:   3'- gGUAgCCGUaCGGa---AGCGG----CG-GCCGG- -5'
30877 3' -59.7 NC_006552.1 + 5424 0.66 0.525296
Target:  5'- gCCAUCaGGCugcgcGCCaguugUUCGCCGCgcUGGCg -3'
miRNA:   3'- -GGUAG-CCGua---CGG-----AAGCGGCG--GCCGg -5'
30877 3' -59.7 NC_006552.1 + 57237 0.66 0.522275
Target:  5'- gCCAcUGGCAccGCCUcgagcggaacgcccUCGCCGaCGGCg -3'
miRNA:   3'- -GGUaGCCGUa-CGGA--------------AGCGGCgGCCGg -5'
30877 3' -59.7 NC_006552.1 + 38467 0.67 0.515253
Target:  5'- gCCGcuggUGGcCGUGCCUuugCGCCccuggaaaCCGGCCg -3'
miRNA:   3'- -GGUa---GCC-GUACGGAa--GCGGc-------GGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 63241 0.67 0.515253
Target:  5'- gCGcCGGCuGUGCCUaUCGCC-UCGGCa -3'
miRNA:   3'- gGUaGCCG-UACGGA-AGCGGcGGCCGg -5'
30877 3' -59.7 NC_006552.1 + 19736 0.67 0.505289
Target:  5'- aCGUUGGCGcugGCCgcUGCgCGCCaGGCUu -3'
miRNA:   3'- gGUAGCCGUa--CGGaaGCG-GCGG-CCGG- -5'
30877 3' -59.7 NC_006552.1 + 15973 0.67 0.495408
Target:  5'- uCC-UCGGCA-GCCUgcuggagCGCgGCCuGCUg -3'
miRNA:   3'- -GGuAGCCGUaCGGAa------GCGgCGGcCGG- -5'
30877 3' -59.7 NC_006552.1 + 18738 0.67 0.494425
Target:  5'- aUAUCgGGCAgugguccgGCCUgugcaauggccugUUGCUGCCGuGCCg -3'
miRNA:   3'- gGUAG-CCGUa-------CGGA-------------AGCGGCGGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.